filterByFrequency {midasHLA} | R Documentation

## Filter MiDAS object by frequency

### Description

Filter MiDAS object by frequency

### Usage

    filterByFrequency(
      object,
      experiment,
      lower_frequency_cutoff = NULL,
      upper_frequency_cutoff = NULL,
      carrier_frequency = FALSE
    )

### Arguments

`object` | `MiDAS` object.
`experiment` | String specifying experiment.
`lower_frequency_cutoff` | Number giving lower frequency threshold. Numbers greater than 1 are interpreted as the number of feature occurrences, numbers between 0 and 1 as fractions.
`upper_frequency_cutoff` | Number giving upper frequency threshold. Numbers greater than 1 are interpreted as the number of feature occurrences, numbers between 0 and 1 as fractions.
`carrier_frequency` | Logical flag indicating if carrier frequency should be returned.

### Value

Filtered `MiDAS` object.

### Examples

    filterByFrequency(object = MiDAS_tut_object,
                      experiment = "hla_alleles",
                      lower_frequency_cutoff = 0.05,
                      upper_frequency_cutoff = 0.95,
                      carrier_frequency = TRUE)

[Package midasHLA version 1.2.0 Index]