kableResults {midasHLA} | R Documentation

## Create association analysis results table in HTML or LaTeX

### Description

`kableResults` convert results table (`runMiDAS` output) to HTML or LaTeX format.

### Usage

    kableResults(
      results,
      colnames = NULL,
      header = "MiDAS analysis results",
      pvalue_cutoff = NULL,
      format = getOption("knitr.table.format"),
      scroll_box_height = "400px"
    )

### Arguments

`results` | Tibble as returned by `runMiDAS`.
`colnames` | Character vector of form `c("new_name" = "old_name")`, used to rename `results` colnames.
`header` | String specifying results table header.
`pvalue_cutoff` | Number specifying p-value cutoff for results to be included in output. If `NULL` no filtering is done.
`format` | String `"latex"` or `"html"`.
`scroll_box_height` | A character string indicating the height of the table.

### Value

Association analysis results table in HTML or LaTeX.

### Examples

    midas <- prepareMiDAS(hla_calls = MiDAS_tut_HLA,
                          colData = MiDAS_tut_pheno,
                          experiment = "hla_alleles")
    object <- lm(disease ~ term, data = midas)
    res <- runMiDAS(object, experiment = "hla_alleles", inheritance_model = "additive")
    kableResults(results = res,
                 colnames = c("HLA allele" = "allele"))

[Package midasHLA version 1.2.0 Index]