hlaAlignmentGrantham {midasHLA} | R Documentation

## Helper function returning alignment for Grantham distance calculations

### Description

Helper function returning alignment for Grantham distance calculations

### Usage

    hlaAlignmentGrantham(gene, aa_sel = 2:182)

### Arguments

`gene` | Character vector specifying HLA gene.
`aa_sel` | Numeric vector specifying amino acids that should be extracted.

### Value

HLA alignment processed for grantham distance calculation. Processing includes extracting specific amino acids, masking indels, gaps and stop codons.

[Package midasHLA version 1.2.0 Index]