prepareMiDAS_hla_divergence {midasHLA} | R Documentation

## Prepare MiDAS data on HLA divergence level

### Description

Prepare MiDAS data on HLA divergence level

### Usage

    prepareMiDAS_hla_divergence(
      hla_calls,
      hla_divergence_aa_selection = "binding_groove",
      ...
    )

### Arguments

`hla_calls` | HLA calls data frame, as returned by `readHlaCalls` function.
`hla_divergence_aa_selection` | String specifying variable region in peptide binding groove which should be considered for Grantham distance calculation. Valid choices includes: `"binding_groove"`, `"B_pocket"`, `"F_pocket"`. See details for more information.
`...` | Not used

### Value

Matrix

[Package midasHLA version 1.2.0 Index]