getExperimentFrequencies {midasHLA} | R Documentation

## Calculate experiment's features frequencies

### Description

`getExperimentFrequencies` calculate features frequencies.

### Usage

    getExperimentFrequencies(
      experiment,
      pop_mul = NULL,
      carrier_frequency = FALSE,
      ref = NULL
    )

    ## S3 method for class 'matrix'
    getExperimentFrequencies(
      experiment,
      pop_mul = NULL,
      carrier_frequency = FALSE,
      ref = NULL
    )

    ## S3 method for class 'SummarizedExperiment'
    getExperimentFrequencies(
      experiment,
      pop_mul = NULL,
      carrier_frequency = FALSE,
      ref = NULL
    )

### Arguments

`experiment` | Matrix or SummarizedExperiment object.
`pop_mul` | Number by which number of samples should be multiplied to get the population size.
`carrier_frequency` | Logical flag indicating if carrier frequency should be returned.
`ref` | Wide format data frame with first column named "var" holding features matching `experiment` and specific populations frequencies in following columns. See `getReferenceFrequencies` for more details.

### Value

Data frame with each row holding specific variable, it's count and frequency.

[Package midasHLA version 1.2.0 Index]