hlaCallsToCounts {midasHLA} | R Documentation

## Transform HLA calls to counts table

### Description

`hlaCallsToCounts` converts HLA calls data frame into a counts table.

### Usage

    hlaCallsToCounts(hla_calls, check_hla_format = TRUE)

### Arguments

`hla_calls` | HLA calls data frame, as returned by `readHlaCalls` function.
`check_hla_format` | Logical indicating if `hla_calls` format should be checked. This is useful if one wants to use `hlaCallsToCounts` with input not adhering to HLA nomenclature standards. See examples.

### Value

HLA allele counts data frame. First column holds samples ID's, further columns, corresponding to specific alleles, give information on the number of their occurrences in each sample.

[Package midasHLA version 1.2.0 Index]