plotDAbeeswarm {miloR} | R Documentation

## Visualize DA results as a beeswarm plot

### Description

Visualize DA results as a beeswarm plot

### Usage

    plotDAbeeswarm(da.res, group.by = NULL, alpha = 0.1, subset.nhoods = NULL)

### Arguments

`da.res` | a data.frame of DA testing results
`group.by` | a character scalar determining which column of `da.res` to use for grouping. This can be a column added to the DA testing results using the 'annotateNhoods' function. If `da.res[,group.by]` is a character or a numeric, the function will coerce it to a factor (see details) (default: NULL, no grouping)
`alpha` | significance level for Spatial FDR (default: 0.1)
`subset.nhoods` | A logical, integer or character vector indicating a subset of nhoods to show in plot (default: NULL, no subsetting)

### Details

The group.by variable will be coerced to a factor. If you want the variables in group.by to be in a given order make sure you set the column to a factor with the levels in the right order before running the function.

### Value

a `ggplot` object

### Author(s)

Emma Dann

### Examples

    NULL

[Package miloR version 1.2.0 Index]