mina-class {mina} | R Documentation

## Class "mina" includes the quantitative table and descriptive table.

### Description

Class "mina" includes the quantitative table and descriptive table.

### Slots

`tab`

  The quantitative table of the dataset.

`des`

  The descriptive table of the samples listed in @tab.

`norm`

  The normalized quantitative table of @tab.

`dis`

  The distance / dissimilarity matrix between samples in @tab.

`dmr`

  The list of dimensionality reduction result, includes points and variance.

`adj`

  The adjacency matrix between pairwise compositions (e.g. OTUs/ASVs)

`adj_sig`

  The P-value matrix of adjacency matrix, only applicable for Pearson and Spearman correlation adjacency matrices.

`cls`

  The cluster information for each composition.

`cls_tab`

  The cluster quantitative table.

`multi`

  The list of subsampled adjacency matrices for each environment.

`perm`

  The list of permutated adjacency matrices for each pairwise environmental comparison.

`dis_bs`

  The distance between networks of different environmental communities.

`dis_pm`

  The distance between networks of permutated groups.

`dis_stat`

  The average distance between subsampled environmental community networks, permutated networks and corresponding significance.

### Author(s)

Rui Guan https://github.com/Guan06

### Examples

    maize <- new("mina", tab = maize_asv, des = maize_des)

[Package mina version 1.2.0 Index]