com_plot {mina} | R Documentation

## Visulization of components distance / dissimilarity in k dimension.

### Description

Visulization of components distance / dissimilarity in k dimension.

### Usage

    com_plot(x, match, ...)

### Arguments

`x` | An object of class 'mina' with 'dmr' and 'des' defined.
`match` | The column name of the components IDs in 'des' which exactly the same indicated in 'dmr'.
`...` | Additional parameters.

### Value

The PCoA plot.

### Examples

    maize <- new("mina", tab = maize_asv2, des = maize_des2)
    maize <- norm_tab(maize, method = "raref", depth = 5000)
    maize <- fit_tabs(maize)
    maize <- com_dis(maize, method = "bray")
    maize <- dmr(maize)
    p1a <- com_plot(maize, match = "Sample_ID", color = "Compartment")
    p1b <- com_plot(maize, match = "Sample_ID", d1 = 3, d2 = 4,
    color = "Compartment")
    p2a <- com_plot(maize, match = "Sample_ID", color = "Host_genotype")
    p2b <- com_plot(maize, match = "Sample_ID", d1 = 1, d2 = 3, color =
    "Host_genotype")
    p3a <- com_plot(maize, match = "Sample_ID", color = "Compartment", shape =
    "Soil")
    p3b <- com_plot(maize, match = "Sample_ID", d1 = 1, d2 = 4, color =
    "Compartment", shape = "Soil")

[Package mina version 1.2.0 Index]