get_net_cls_tab {mina} | R Documentation

## Get the cluster table 'cls_tab' from quantitative table 'norm' and network clustering results 'cls'.

### Description

Get the cluster table 'cls_tab' from quantitative table 'norm' and network clustering results 'cls'.

### Usage

    get_net_cls_tab(x_norm, x_cls, uw = FALSE)

### Arguments

`x_norm` | The normalized quantitative table used for netowrk inference and clustering.
`x_cls` | The network clustering table.
`uw` | By summing up the number of present components of each cluster instead of relative abundance, default is FALSE.

### Value

x_cls The quantitative table with clusters in rows.

### Examples

    maize <- new("mina", tab = maize_asv2, des = maize_des2)
    maize <- norm_tab(maize, method = "raref", depth = 1000)
    maize <- fit_tabs(maize)
    maize_norm <- norm(maize)
    maize_adj <- adj(maize_norm, method = "spearman")
    maize_cls <- net_cls(maize_adj, method = "ap", cutoff = 0.5)
    maize_cls_tab <- get_net_cls_tab(maize_norm, maize_cls)

[Package mina version 1.2.0 Index]