sparcc {mina} | R Documentation

## Function for 'sparcc' correlation calculation. Modified from Schmidt et al. 2016, find the scripts here and the SparCC paper here.

### Description

Function for 'sparcc' correlation calculation. Modified from Schmidt et al. 2016, find the scripts here and the SparCC paper here.

### Usage

    sparcc(x, threads = 80, nblocks = 400)

### Arguments

`x` | An matrix for correlation calculation.
`threads` | The number of threads used for parallel running, 80 by default.
`nblocks` | The number of row /column for splitting sub-matrix, 400 by default.

### Value

y The adjacency matrix.

### Examples

    ## Not run:
    asv_sparcc <- sparcc(maize_asv2, threads = 2, nblocks = 40)

    ## End(Not run)

[Package mina version 1.2.0 Index]