net_dis_pcoa {mina} | R Documentation

## Visulization of spectra network distance as PCoA.

### Description

Visulization of spectra network distance as PCoA.

Visulization of spectra network distance as PCoA.

### Usage

    net_dis_pcoa(x)

    ## S4 method for signature 'character'
    net_dis_pcoa(x)

### Arguments

`x` | The folder with all egv files generated by net_dis_indi().

### Value

p The plotted figure.

p The plotted figure.

### Examples

    ## Not run:
    data(maize)
    norm(maize) <- maize_asv2
    maize <- fit_tabs(maize)
    maize <- bs_pm(maize, group = "Compartment", individual = TRUE, out_dir =
    "./individual_bs_pm/")
    maize <- net_dis_indi("./individual_bs_pm/", method = "spectra", egv = TRUE,
    dir = "./egv_folder/")
    p <- net_dis_pcoa("./egv_folder/")

    ## End(Not run)
    ## Not run:
    data(maize)
    maize <- norm_tab(maize)
    maize <- fit_tabs(maize)
    maize <- get_rep(maize, top = 5)
    maize <- bs_pm(maize, group = "Compartment", individual = TRUE, out_dir =
    "./individual_bs_pm/")
    maize <- net_dis_indi("./individual_bs_pm/", method = "spectra", egv = TRUE,
    dir = "./egv_folder/")
    p <- net_dis_pcoa("./egv_folder/")

    ## End(Not run)

[Package mina version 1.2.0 Index]