getInputSpecies {mirTarRnaSeq} | R Documentation

## Return Miranda data for a given species.

### Description

Reads Miranda file for a given speicies and returns it as a data.frame, thresholded by percent identity. Header options are Score (threshold), Energy-Kcal/Mol(energy), Subject-IdentityPercent(targetIden), Query-IdentityPercent (mirnaIden)

### Usage

    getInputSpecies(
      selection,
      threshold = 60,
      energy = NULL,
      targetIden = NULL,
      mirnaIden = NULL
    )

### Arguments

`selection` | Species (species selection are either for mature miRNA species "Human1","Mouse", "C.elegans", "Epstein_Barr", "Epstein_Barr_Human", "Drosophila","Kaposi_Sarcoma", "KSHV_Human", "Cytomegalovirus","CMV_Human")
`threshold` | miRanda score threshold default 60
`energy` | miRanda folding energy threshold default NULL
`targetIden` | miRanda target identity score default NULL
`mirnaIden` | miRanda mirna identity score default NULL

### Value

data.frame with Miranda data.

### Examples

    x <- getInputSpecies("Epstein_Barr", threshold = 60) # Default is threshold 60

[Package mirTarRnaSeq version 1.2.0 Index]