extract_good_branched_ordering {monocle} | R Documentation

## Extract a linear ordering of cells from a PQ tree

### Description

Extract a linear ordering of cells from a PQ tree

### Usage

    extract_good_branched_ordering(
      orig_pq_tree,
      curr_node,
      dist_matrix,
      num_branches,
      reverse_main_path = FALSE
    )

### Arguments

`orig_pq_tree` | The PQ object to use for ordering
`curr_node` | The node in the PQ tree to use as the start of ordering
`dist_matrix` | A symmetric matrix containing pairwise distances between cells
`num_branches` | The number of outcomes allowed in the trajectory.
`reverse_main_path` | Whether to reverse the direction of the trajectory

[Package monocle version 2.22.0 Index]