getFabiaClusters {mosbi} | R Documentation

## Extract a list of bicluster objects from an fabia biclustering object.

### Description

Extract a list of bicluster objects from an fabia biclustering object.

### Usage

    getFabiaClusters(bics, mat, transposed = FALSE, filterfun = NULL, ...)

### Arguments

`bics` | Extracted fabia biclusters.
`mat` | Original matrix, that was used for biclustering.
`transposed` | `True`, if the bicluster calculation was performed on a tranposed matrix.
`filterfun` | A function to filter biclusters. Only if the function returns `True`, the bicluster is added to the returned list. The function has to accept a the bicluster (given as submatrix of `mat`) `filterfun(bicluster_matrix, ...)`.
`...` | Other parameters forwarded to the `filterfun`.

### Value

A list of `bicluster` objects, which have to be valid (See `validate_bicluster`.

### Examples

    m <- matrix(seq(1:16), nrow=4)
    # m <- matrix(rnorm(10000), nrow=100)
    # res <- fabia::extractBic(fabia::fabia(m, p=5))
    # getFabiaClusters(res, m)

[Package mosbi version 1.0.3 Index]