plotCircos {msgbsR} | R Documentation

## plotCircos

### Description

Plot a circos representing the cut site locations

### Usage

    plotCircos(cutSites, seqlengths, cutSite.colour, seqlengths.colour)

### Arguments

`cutSites` | A GRanges object containing the locations of the cut sites to be plotted.
`seqlengths` | An integer with the lengths of the chromosomes.
`cutSite.colour` | The colour of the cut sites.
`seqlengths.colour` | The colour of the chromosomes

### Value

A circos plot showing the locations of the cut sites.

### Author(s)

Benjamin Mayne

### Examples

    # load example cut site positions
    data(cuts)
    # Obtain the length of chromosome 20 in rn6
    library(BSgenome.Rnorvegicus.UCSC.rn6)
    chr20 <- seqlengths(BSgenome.Rnorvegicus.UCSC.rn6)["chr20"]
    plotCircos(cutSites = cuts, seqlengths = chr20,
               cutSite.colour = "red", seqlengths.colour = "blue")

[Package msgbsR version 1.18.0 Index]