assessPerformance_Biosigner {multiSight} | R Documentation

## MLmodels biosigner function

### Description

A biosigner models assessing function. to display by confusion matrices for SVM and RF models.

### Usage

    assessPerformance_Biosigner(modelList, dataTest)

### Arguments

`modelList` | Models list computed and returned inside runSVMRFmodels_Biosigner() results.
`dataTest` | List of new omic datasets and samples for same omics that training to test model performances. Returned by splitDatatoTrainTest().

### Value

List of performances for svm and rf models (confusion matrices).

### Examples

    data("omic2", package = "multiSight")
    splitData <- splitDatatoTrainTest(omic2, 0.8)
    data.train <- splitData$data.train
    data.test <- splitData$data.test

    #biosignerRes <- runSVMRFmodels_Biosigner(data.train)
    data("biosignerRes", package = "multiSight")
    biosignerModels <- biosignerRes$model #list of SVM/RF models for each omic.
    biosignerFeats <- biosignerRes$biosignature #selected features for each omic.
    perfBiosigner <- assessPerformance_Biosigner(biosignerModels, data.test)
    perfBiosigner$svm$rnaRead # perf for SVM for rnaRead data block.
    perfBiosigner$rf$rnaRead # perf for RF for rnaRead data block.

[Package multiSight version 1.2.0 Index]