runMultiDeseqAnalysis {multiSight} | R Documentation

## Enrichment function

### Description

Runs DESEQ2 analysis on all omic data blocks.

### Usage

    runMultiDeseqAnalysis(omicDataList, padjUser)

### Arguments

`omicDataList` | List of omic data blocks with Y class vector.
`padjUser` | Threshold for p-value adjusted to select features according to padj values in DESeq2 table.

### Value

List of DESeq2's Differential Expression tables for all omic datasets (e.g. BaseMean, Log2FoldChange, padj columns).

### Examples

    data("omic2", package = "multiSight")
    #deseqRes <- runMultiDeseqAnalysis(omic2, 0.05)
    data("deseqRes", package = "multiSight")
    print(deseqRes$DEtable$rnaRead)

[Package multiSight version 1.2.0 Index]