8c8d527dcdca71981fc12c0ff419e4c4 *DESCRIPTION
04591395fdd19822483dc66dc78617b7 *INDEX
9f8bcbc18dc82f4010a16736eccaf21b *Meta/Rd.rds
9b3e1d8bb7e3470606a5680b066d8820 *Meta/data.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
3d1e2a92d9ada2aab92904888464401e *Meta/hsearch.rds
87b098f10f49ac9bfb981d5f457245a3 *Meta/links.rds
16758bff33730ccf4bf28f6880efb736 *Meta/nsInfo.rds
c3c6bc35b0166300568305534c7aa914 *Meta/package.rds
1bb5a04b1f7ff9e1e599201263902770 *Meta/vignette.rds
449d4e8a21ed30dbe920080ffa29da5c *NAMESPACE
1eaad81a30dc38c729fbf4de52ebf423 *NEWS.md
d6c68f1fe41ced6e98a766a3757313da *R/musicatk
72ea3755f8c7c198510778a4639d2bfb *R/musicatk.rdb
e3d5cfca80b6daf93ab7c8527d9105be *R/musicatk.rdx
c7c3beb8ecdef61302654c9679034542 *data/Rdata.rdb
39611282cefd81797fa5f53f90116588 *data/Rdata.rds
ccb9d1a66251fb66b52711a6e6ec2671 *data/Rdata.rdx
6cffb0c727a7cc98b4f0fc78bae98044 *doc/index.html
f04d0a22211bb1db31f001943201ce1e *doc/musicatk.R
5e28432752ab2702f6f1d6ae6b9c35aa *doc/musicatk.Rmd
2a3f035b61483dd9f65b460f7e1c6fa6 *doc/musicatk.html
e651b9f791d0c38f2bd45aca9864cef9 *extdata/public_LUAD_TCGA-97-7938.vcf
15c6b74e55900b3c276db4cc3885f77f *extdata/public_SKCM_TCGA-EE-A3J5-06A-11D-A20D-08.vcf
3ea253273b24dd59a3016baee77ef91a *extdata/public_SKCM_TCGA-ER-A197-06A-32D-A197-08.vcf
a6d9fec3bbf4ff3b47a76eb83ad724ed *extdata/public_SKCM_TCGA-ER-A19O-06A-11D-A197-08.vcf
37706ffefe7ff446358829c5d04a4ae4 *extdata/public_TCGA.LUSC.maf
271456a707445309282c1460f964dd31 *extdata/sample_annotations.txt
3103e0d76b0f117568bc894a412c48dd *help/+25+3E+25.html
5cd862777a916dc11f9963f186666aca *help/AnIndex
6bca2b21bc6d7b964d4cc7bff5a85c68 *help/add_flank_to_variants.html
d297cff26f560d3337515895a333f167 *help/add_variant_type.html
d311e29c6326fd61b404ec8cfc11f389 *help/aliases.rds
5b73776b6720036eca3a7fe3eb4c797e *help/annotate_replication_strand.html
2c6d128a2b0293749364d4924a12a622 *help/annotate_transcript_strand.html
da465d248d101140595f9e5f51b3c6e1 *help/annotate_variant_length.html
d327f58bfcf3b6ed478b2665a1a61466 *help/annotate_variant_type.html
9b53973b42aba1049f75c79726b503ca *help/auto_predict_grid.html
1be46a08921bbf6aecd0ef49e8cb5a16 *help/auto_subset_sigs.html
c628b6fa5348b9ff0695f5d7c50c750f *help/build_custom_table.html
35a827b31ece966fc4c3f76558862ad3 *help/build_standard_table.html
10c373d768561ee63a1c1b095aceab1d *help/built_tables+2Cmusica-method.html
10c373d768561ee63a1c1b095aceab1d *help/built_tables+2Cmusica_result-method.html
10c373d768561ee63a1c1b095aceab1d *help/built_tables.html
7679bef2af52405b0f460277b3049722 *help/cluster_exposure.html
d58f98a4077b9d76290b029fe15de6de *help/combine_count_tables.html
4ebd489e81b6c6c343f7a82ef1e9c2cb *help/combine_predict_grid.html
aec5019234456d10b6a7b129d894c69c *help/compare_cosmic_v2.html
a20174b8dd9daa5b908fd156a0a1637a *help/compare_cosmic_v3.html
1a004b5a64bda83012223331358707b0 *help/compare_results.html
db35766acecb593bff018f1dafba4e7f *help/cosmic_v2_sigs.html
499af42957ca2b41f254a4027ea44d76 *help/cosmic_v2_subtype_map.html
94602e033aafed3d34786d52c17eb3cd *help/cosmic_v3_dbs_sigs.html
59d7a507262ce84b572b0ff2d76a4929 *help/cosmic_v3_indel_sigs.html
d2f6c0b2299ecf6abaea7c4f81163fdb *help/cosmic_v3_sbs_sigs.html
43b157c45ef2648783b0c8427967df04 *help/cosmic_v3_sbs_sigs_exome.html
2ee5d57c3cfa82f4d2b94deb6d5b66a7 *help/count_table-class.html
3d7aaaa363bdf5d2239882edd1aef4fe *help/create_dbs78_table.html
aa5e4a1e8e2c4bbd707e04b9d0e91631 *help/create_musica.html
e344ad360f34b84b8f5de766e07dba8a *help/create_sbs192_table.html
d0fbdec2390969d808120c809b29fb7f *help/create_sbs96_table.html
eb80fb1123f45da7f47bcee0e5dde84e *help/create_umap.html
25ee43920189830ce497de0977fac512 *help/dbs_musica.html
77bcb631f30f1bcfff2a4f579f20a76a *help/discover_signatures.html
8a2a00a5d7e1c2bf2226738750e0284c *help/dot-jsd.html
d7eb28681ba886db12d1b5767265141b *help/drop_annotation.html
45c571c82f2c22b09fd736790cabae31 *help/exposure_differential_analysis.html
d7f4ceee00247f914001b3312381e41c *help/exposures+2Cmusica_result-method.html
d7f4ceee00247f914001b3312381e41c *help/exposures+3C-+2Cmusica_result+2Cmatrix-method.html
d7f4ceee00247f914001b3312381e41c *help/exposures+3C-.html
d7f4ceee00247f914001b3312381e41c *help/exposures.html
f951ac271c071bebcdcb9dd576b5ad54 *help/extract_count_tables.html
0f44dcf81b0ba17190d67c16680dbe1e *help/extract_variants.html
9fc4582d0f315ce01f5d08d36edebec6 *help/extract_variants_from_maf.html
b00eb8b9ce43b63a2f63b17f2b1d7ddf *help/extract_variants_from_maf_file.html
dd0eddd0f0185626a24bd3c36fb52921 *help/extract_variants_from_matrix.html
a480edcde2be329acf865bfa97beb57b *help/extract_variants_from_vcf.html
85a17e8d40575977b8c4ac93a5b830c0 *help/extract_variants_from_vcf_file.html
9d087f4630424bfe3c7b2580077dae11 *help/generate_result_grid.html
850aacb9bbbef557cdcf85596aac359f *help/get_musica+2Cmusica_result-method.html
850aacb9bbbef557cdcf85596aac359f *help/get_musica.html
06fac0a0cbadbc25dd0231c6364838b2 *help/indel_musica.html
021f263a6b494a44007a8882e8e6333f *help/k_select.html
c50463a9eb7828988c744854c3acc4d1 *help/musica-class.html
433f66cdcc73a51b6dc77825f7d34362 *help/musica.html
d18df90f4f8ad92df59fb7c83bc195a7 *help/musica_annot.html
e5d5b07f7aa364ba1344045d7f8f4dad *help/musica_result-class.html
4ae38c88a5b5142d68bd496c307a3dbc *help/musica_result_grid-class.html
fa4809a053ea36124bba20319dc673cf *help/musica_sbs96.html
22f999945c536a30b89195959836f491 *help/musica_sbs96_tiny.html
4526f88da84751c07dda9fcc0612ccf1 *help/musicatk.html
a48c01ed98ebbb845e304c2a916ab209 *help/musicatk.rdb
b587173df4c34061d67d837dc0e052ba *help/musicatk.rdx
02f08e9ab6b2a85ec0651a2e27e63435 *help/name_signatures.html
e2803cfd6b8288177d3b49dbb6c07b1d *help/paths.rds
3103e0d76b0f117568bc894a412c48dd *help/pipe.html
eb56461e5d5ebbe56905b26d420ae37e *help/plot_cluster.html
c1a8fd1652ee0f3e3aabc599c3798f34 *help/plot_differential_analysis.html
9e321f8344d24157787007d379881ae9 *help/plot_exposures.html
5c7173cde0410b00b88b8c69231764ed *help/plot_heatmap.html
3b63bcd89b95cfc9162cace4c097fec1 *help/plot_sample_counts.html
ddd25867f0578f9ba23f4ac6c72cff3b *help/plot_sample_reconstruction_error.html
851a457439e3c26c5e97b7f6858a3c64 *help/plot_signatures.html
1508f68085db51860b02bfc25911d9ca *help/plot_umap.html
0382a0f51e9639f4c68b4b14c72013bc *help/predict_exposure.html
2241c4d13fdf318ffacaa921367f39ae *help/rc.html
66b09b524ba83bd02bbff1f23bd65f0f *help/rep_range.html
38fe9060ae3a6a171e09d3a3d4334fbc *help/res.html
b75e17b6ffc1a1b3ebdb70145b81c0f7 *help/res_annot.html
e614904973947f92c2d2a422722659ae *help/samp_annot+2Cmusica-method.html
e614904973947f92c2d2a422722659ae *help/samp_annot+2Cmusica_result-method.html
e614904973947f92c2d2a422722659ae *help/samp_annot+3C-+2Cmusica+2Ccharacter+2Cvector-method.html
e614904973947f92c2d2a422722659ae *help/samp_annot+3C-+2Cmusica_result+2Ccharacter+2Cvector-method.html
e614904973947f92c2d2a422722659ae *help/samp_annot+3C-.html
e614904973947f92c2d2a422722659ae *help/samp_annot.html
301bbd4859f6202bc738520eeef1beb6 *help/sample_names+2Cmusica-method.html
301bbd4859f6202bc738520eeef1beb6 *help/sample_names+2Cmusica_result-method.html
301bbd4859f6202bc738520eeef1beb6 *help/sample_names.html
8c186a5a1b5809874e063f1d2ec5033c *help/select_genome.html
5571793ae81c85d38f0cf76c7653a5fc *help/signatures+2Cmusica_result-method.html
5571793ae81c85d38f0cf76c7653a5fc *help/signatures+3C-+2Cmusica_result+2Cmatrix-method.html
5571793ae81c85d38f0cf76c7653a5fc *help/signatures+3C-.html
5571793ae81c85d38f0cf76c7653a5fc *help/signatures.html
0c46700a62296e818c61a1af7678e598 *help/subset_musica_by_annotation.html
5c224eec00b4b629c15785030b445f0b *help/subset_musica_by_counts.html
7b11803d2e13f04df0c45ff2fc29bd8e *help/subset_variant_by_type.html
b9c30a7f4c970b744d54e5ba2c378425 *help/subset_variants_by_samples.html
a8e988b55f11f3d93f4d5050b583d886 *help/table_96.html
64a552bbc8a743fe456979f842d4d6f5 *help/table_selected+2Cmusica_result-method.html
64a552bbc8a743fe456979f842d4d6f5 *help/table_selected.html
f898359756d186cc4c0c68361000a414 *help/tables+2Cmusica-method.html
f898359756d186cc4c0c68361000a414 *help/tables+2Cmusica_result-method.html
f898359756d186cc4c0c68361000a414 *help/tables+3C-+2Cmusica+2Clist-method.html
f898359756d186cc4c0c68361000a414 *help/tables+3C-.html
f898359756d186cc4c0c68361000a414 *help/tables.html
21e0ac6096500a6b278f1d5254edf860 *help/umap+2Cmusica_result-method.html
21e0ac6096500a6b278f1d5254edf860 *help/umap+3C-+2Cmusica_result+2Cmatrix-method.html
21e0ac6096500a6b278f1d5254edf860 *help/umap+3C-.html
21e0ac6096500a6b278f1d5254edf860 *help/umap.html
3a8af15c72f0c7397cb7fac4c1f59a9f *help/variants+2Cmusica-method.html
3a8af15c72f0c7397cb7fac4c1f59a9f *help/variants+2Cmusica_result-method.html
3a8af15c72f0c7397cb7fac4c1f59a9f *help/variants+3C-+2Cmusica+2Cdata.table-method.html
3a8af15c72f0c7397cb7fac4c1f59a9f *help/variants+3C-.html
3a8af15c72f0c7397cb7fac4c1f59a9f *help/variants.html
48b7eebb922299411d00ea6cfdc9bfca *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
3025d65572a0e734f85cd3bec81d14d7 *html/add_flank_to_variants.html
235ff0dfd53d705f44b61b072dacc348 *html/add_variant_type.html
6c0c8f24cc51f4f28f030b016afa81f0 *html/annotate_replication_strand.html
47e25ba4977c428945e505a106419f73 *html/annotate_transcript_strand.html
85098c27140d858faf9ae71735c6e5c8 *html/annotate_variant_length.html
0c04b33f52ec1f8d33280e5214c8fed6 *html/annotate_variant_type.html
f5a803e337977fe87c8d8a1a4a4b8030 *html/auto_predict_grid.html
8465dbad117baa0d14d69d12948c3fc4 *html/auto_subset_sigs.html
6f647276a3e0fccd74a09c9d0fd11fdf *html/build_custom_table.html
d74ef292f6617189656b6418793d7e16 *html/build_standard_table.html
0043e30f4b41f000b71c8ee281082407 *html/built_tables.html
dc712005269e16d922ee6297751ae073 *html/cluster_exposure.html
2ead30b1b9dbb9559454b68ba7b82a81 *html/combine_count_tables.html
0570c85f20c13289e30bd5298fdc1d97 *html/combine_predict_grid.html
224af1e880939c0fb77db9763dc13bcd *html/compare_cosmic_v2.html
cfabd0cd0627c77811abd8cd40b67bfd *html/compare_cosmic_v3.html
81541188394b43392c72329125a0cfc1 *html/compare_results.html
6b4a6bd72098ed36034b0d1bff8f1aad *html/cosmic_v2_sigs.html
0c05f8bd105931ee9f11adebbe75571f *html/cosmic_v2_subtype_map.html
034aac5de17e5a1fc6465bc21e296f81 *html/cosmic_v3_dbs_sigs.html
47af9c4ef8819b7a9b3a1ff37ab6377a *html/cosmic_v3_indel_sigs.html
a40302ede12b5cf7e64bfa6a3b7573fb *html/cosmic_v3_sbs_sigs.html
9d00fb26d43484134b1697cf692c5977 *html/cosmic_v3_sbs_sigs_exome.html
c7487975f6a58f0d905348012272cf29 *html/count_table-class.html
18028348dc1709edca93407c78591134 *html/create_dbs78_table.html
916b72422829a4a14b6c06b3aceec387 *html/create_musica.html
1131e1d342532bd9a9118423cb988856 *html/create_sbs192_table.html
52ffe211c1775c50b8b97c0f738f33f9 *html/create_sbs96_table.html
25f10d278cb4424edcdf74646a124199 *html/create_umap.html
c08837f3a824b7644246eecea4e14e2a *html/dbs_musica.html
42f9113d9b99f085eb668b36e87c0962 *html/discover_signatures.html
c79c49ef20ff58d669cda5238907578d *html/dot-jsd.html
9b6177126abf539a474c434f37293bdf *html/drop_annotation.html
e251f19463f0ba629fb2df7e21114f9b *html/exposure_differential_analysis.html
0f27d12791d291e14438916d8c330f8c *html/exposures.html
db751df33bf19281699d8a53a9de9565 *html/extract_count_tables.html
cac111c66575a1acef75a9c7a3d7bfac *html/extract_variants.html
6692e3279bd2f25a722dfac8a1abf657 *html/extract_variants_from_maf.html
42e8cfaea03cb176b3047b91aa1bf4b1 *html/extract_variants_from_maf_file.html
43040e373365de562e3b0e5c010fbf99 *html/extract_variants_from_matrix.html
fc0d053c404995b5a81e4584b75357d0 *html/extract_variants_from_vcf.html
6b4ecbebaa27874f6a5662eca066fee2 *html/extract_variants_from_vcf_file.html
a3a18f95419af360f7a0ac3ca5796451 *html/generate_result_grid.html
40370e236caba539cc2c2a3ef33f9536 *html/get_musica.html
398f46343b1d4bd7d1b139a944480ab5 *html/indel_musica.html
db3fec8c769818bb7fb7d4d188ad4608 *html/k_select.html
ebdce38171fa8bfadc4f28caef9299e5 *html/musica-class.html
27bf28b0883f7a958830b52046669c9e *html/musica.html
a147438f37b594ebc395499e70cef6d8 *html/musica_annot.html
620cefd8d60407c9c88a3be2f7f4df36 *html/musica_result-class.html
3a31ffe6c5c929fa984ee6b8ef8a558e *html/musica_result_grid-class.html
8074de8757fbdb0d8d7774039ea79fbc *html/musica_sbs96.html
e6daefc69afbf6d6f5feef2340297bad *html/musica_sbs96_tiny.html
b38f6737900ad010379c3f581b9d3938 *html/musicatk.html
427952541abdb01e1370e17ff414323e *html/name_signatures.html
53b6462898a62576441ab57dba8daabc *html/pipe.html
8c2b36b66cd4e7441fa9093a79fcae33 *html/plot_cluster.html
c473a539787a08fc02e1ff5d119781ea *html/plot_differential_analysis.html
15d34422de3661c1952a790e83a8497d *html/plot_exposures.html
7389751349af23c7b0f85b001acd86ec *html/plot_heatmap.html
1a97b3141ffb1c8584ea721d210a572f *html/plot_sample_counts.html
a0d50f33bddd2ce6b9d421af520f0619 *html/plot_sample_reconstruction_error.html
ccdbec9d8500ab19735511dfa031baa0 *html/plot_signatures.html
64f11f05bacf2d4bc3de516769349c42 *html/plot_umap.html
7475becc78945cfbe846fbe6b652b4da *html/predict_exposure.html
cfec7863312d4375a2e549b51fb43356 *html/rc.html
c750965febba2c35a933abe19b3d8ad5 *html/rep_range.html
ca2dfeb3f4aa696e570791b53740bd0c *html/res.html
442aab1f4cd3f281649ba117e7d6bc5f *html/res_annot.html
1b8e166f5912c48b0cc4799566e6a980 *html/samp_annot.html
19a768182ba236a5f530fcc344984404 *html/sample_names.html
b26b0cfad21a63da92ebb57741b3fea2 *html/select_genome.html
c6ef04ae77d53fed1c80479e404696e2 *html/signatures.html
65322b07a69200926633d3f626782164 *html/subset_musica_by_annotation.html
145928c92e9f7c7a6faba2cab146b14e *html/subset_musica_by_counts.html
5989ca729ee0ca34f6b00dec204572ac *html/subset_variant_by_type.html
d35d0fd1819bc29d4c09e66513db3b3f *html/subset_variants_by_samples.html
16a3c9dfb144ebf3107d86c6c8808290 *html/table_96.html
82f333b99bf1aa74d42546d72ae68a91 *html/table_selected.html
a4499fdaaac9f2c90fcbfc264849a3d8 *html/tables.html
8a29170abc6a1aea12aa1d2a2c91c2bb *html/umap.html
521615c1d166eac2e4a2b62fff80dfb4 *html/variants.html
0a78fc13c5130c01ecfa508da9b8f217 *script/example_data.R
75797c30b4999d7995e8e9ad90a41678 *shiny/app.R
0ff97526cd5fef95568d233289e4822f *shiny/server.R
b3ab21ba52644d26ee99394d2f681ccf *shiny/server_tables.R
d41d8cd98f00b204e9800998ecf8427e *shiny/style.CSS
804ab75a55c3bb88e1f2a6ce7ea4f6c2 *shiny/ui.R
51c4da64ebc6eca2c4d3d3c21502f2c3 *shiny/ui_annotations.R
c16d4ca9c085d31ed5558e8bc254ea12 *shiny/ui_cluster.R
aa0b9bdbdf96f866afd3d5a00c3313ba *shiny/ui_compare.R
753f98c689ce6a984114683311134af0 *shiny/ui_differentialanalysis.R
666c9b3b8d08a8242e79dfb47d4fad7d *shiny/ui_discover.R
9773a468dc404ab29360dd321f0d497c *shiny/ui_download.R
68b329da9893e34099c7d8ad5cb9c940 *shiny/ui_genome.R
c50d2d51f221b28d5e74a27cf52387a3 *shiny/ui_heatmap.R
f33de83e772b1914938adb285d2e7065 *shiny/ui_help.R
cf859523b6675c9eb5f427bb41a28787 *shiny/ui_import.R
3400d0658a9beacb5232d62b44a4062b *shiny/ui_import_musica.R
430dbf7b452503d918b4dd8a7a642758 *shiny/ui_import_tcga.R
d21aa6fe4d11a172b140fbbaf81b9956 *shiny/ui_musica.R
851d1d084b22127bb92115f1b799b64b *shiny/ui_predict.R
4fba9ca3c63c31c77994a6ef586f6541 *shiny/ui_resultvisualization.R
646938fbc008ea4e30edb5a1cd12a9f3 *shiny/ui_tables.R
