get.subnets,NetResponseModel-method {netresponse} | R Documentation

## get.subnets

### Description

List the detected subnetworks (each is a list of nodes in the corresponding subnetwork).

### Usage

    ## S4 method for signature 'NetResponseModel'
    get.subnets(
      model,
      get.names = TRUE,
      min.size = 2,
      max.size = Inf,
      min.responses = 2
    )

### Arguments

`model` | Output from the detect.responses function. An object of NetResponseModel class.
`get.names` | Logical. Indicate whether to return subnetwork nodes using node names (TRUE) or node indices (FALSE).
`min.size, max.size` | Numeric. Filter out subnetworks whose size is not within the limits specified here.
`min.responses` | Numeric. Filter out subnetworks with less responses (mixture components) than specified here.

### Value

A list of subnetworks.

### Author(s)

Leo Lahti leo.lahti@iki.fi

### References

Leo Lahti et al.: Global modeling of transcriptional responses in interaction networks. Bioinformatics (2010). See citation('netresponse') for details.

### Examples

    ## Load a pre-calculated netresponse model obtained with
    # model <- detect.responses(toydata$emat, toydata$netw, verbose = FALSE)
    # data( toydata ); get.subnets(toydata$model)

[Package netresponse version 1.54.0 Index]