oligoSet {oligoClasses} | R Documentation

## An example instance of oligoSnpSet class

### Description

An example instance of the `oligoSnpSet` class

### Usage

    data(oligoSetExample)

### Source

Created from the simulated locusLevelData provided in this package.

### See Also

`locusLevelData`

### Examples

    	## Not run:
    		## 'oligoSetExample' created by the following
    		data(locusLevelData)
    		oligoSet <- new("oligoSnpSet",
    				copyNumber=integerMatrix(log2(locusLevelData[["copynumber"]]/100), 100),
    				call=locusLevelData[["genotypes"]],
    				callProbability=locusLevelData[["crlmmConfidence"]],
    				annotation=locusLevelData[["platform"]],
    				genome="hg19")
    		oligoSet <- oligoSet[!is.na(chromosome(oligoSet)), ]
    		oligoSet <- oligoSet[chromosome(oligoSet) < 3, ]

    ## End(Not run)
    	data(oligoSetExample)
    	oligoSet

[Package oligoClasses version 1.56.0 Index]