SummarizedExperiment-methods {oligoClasses} | R Documentation

## Methods for RangedSummarizedExperiment objects

### Description

Methods for RangedSummarizedExperiment.

### Usage

    ## S4 method for signature 'RangedSummarizedExperiment'
    baf(object)
    ## S4 method for signature 'RangedSummarizedExperiment'
    chromosome(object,...)
    ## S4 method for signature 'RangedSummarizedExperiment'
    isSnp(object, ...)
    ## S4 method for signature 'RangedSummarizedExperiment'
    lrr(object)

### Arguments

`object` | A RangedSummarizedExperiment object.
`...` | ignored

### Details

`baf` and `lrr` are accessors for the B allele frequencies and log R ratio assays (matrices or arrays), respectively,

`chromosome` returns the `seqnames` of the `rowRanges`.

`isSnp` returns a logical vector for each marker in `rowRanges` indicating whether the marker targets a SNP (nonpolymorphic regions are FALSE).

### See Also

`RangedSummarizedExperiment`

[Package oligoClasses version 1.56.0 Index]