all_genes_babelgene {orthogene} | R Documentation

## Get all genes: babelgene

### Description

Get all genes for a given species using the method "babelgene".

### Usage

    all_genes_babelgene(
      species,
      run_map_species = TRUE,
      save_dir = tools::R_user_dir("orthogene", which = "cache"),
      use_old = FALSE,
      min_support = 1,
      verbose = TRUE
    )

### Arguments

`species` | Species to get all genes for. Will first be standardised with `map_species`.
`run_map_species` | Standardise `species` names with map_species first (Default: `TRUE`).
`save_dir` | Directory to save babelgene mapping files to.
`use_old` | Use an old version of `babelgene::orthologs_df` (stored on GitHub Releases) for consistency.
`verbose` | Print messages.

### Value

All genes.

### Source

babelgene::orthologs_df version differences

[Package orthogene version 1.0.2 Index]