be6507a92387d3d8fb0577e8f8932990 *CITATION
e9055bbca932234ff53dbfdf89e383fa *DESCRIPTION
c079a468186608a0a220ed6d0c392bea *INDEX
ee574a52122f611e15859084d9f2aca9 *Meta/Rd.rds
0ce5c02896bf68b2012663eee6f4f485 *Meta/data.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
ccf087597876967286fd055a2fd0a2c3 *Meta/hsearch.rds
18c58886157ea15b5c5bfdb73053ffaf *Meta/links.rds
b7e60f40f11f74e19e7cd04ca307129e *Meta/nsInfo.rds
e6145b12f3a1a13da7fbe2c0721f0d55 *Meta/package.rds
628e57585c09fb3f40b48f433b92d978 *Meta/vignette.rds
8e43a7b67bd78102f65cc3228a7609b8 *NAMESPACE
b2b19512172c5e369a7b4cced68cf900 *NEWS.md
d6c68f1fe41ced6e98a766a3757313da *R/pRoloc
f1883cc91d89fd73b9a04908635f7fc7 *R/pRoloc.rdb
4d04f29f6bd52b54a1f95130e6fe06c9 *R/pRoloc.rdx
8bc85bb6f519ea1b8ff1978681f7ac4f *data/andy2011params.rda
e16877746e340f64d615295176cb7bbd *data/dunkley2006params.rda
6ba65c21cabbd4c237e3bdaf39ed777e *doc/index.html
7eaf46d6e2a9684f6f6b185a9e4f74a6 *doc/v01-pRoloc-tutorial.R
a603e4892810eaf526dcc1053d1ceadc *doc/v01-pRoloc-tutorial.Rmd
6ceb76a8b09728a6c8824fcf2ac54ed0 *doc/v01-pRoloc-tutorial.html
1d0a6224d4b669735c4057cfb2cbc75c *doc/v02-pRoloc-ml.R
41012799ba56d380c9ad998d1ed86b76 *doc/v02-pRoloc-ml.Rmd
18d88ccc94ea715d0b9bccd61207f03e *doc/v02-pRoloc-ml.html
000d13fbd34498b6a899487dfa5e39a7 *doc/v03-pRoloc-bayesian.R
63e84019db8398a32041dcbf116fe031 *doc/v03-pRoloc-bayesian.Rmd
a966e869b0877bff39296250780ec4e3 *doc/v03-pRoloc-bayesian.html
3408b8dd5a3cbab677d1f0e708c11b90 *doc/v04-pRoloc-goannotations.R
e98dbf061ea8ba2742d144444eec506e *doc/v04-pRoloc-goannotations.Rmd
77360ab1613c840a4e1bdc22bba29157 *doc/v04-pRoloc-goannotations.html
254038705eaf0eab2809e3924cec9a52 *doc/v05-pRoloc-transfer-learning.R
931c82e51f298424179aedb8e32d187a *doc/v05-pRoloc-transfer-learning.Rmd
c41db1b0f797e2f16133b151d26276a6 *doc/v05-pRoloc-transfer-learning.html
a5d08ec2a5e088add5f5c0764aaeae20 *extdata/dunkley2006pdunittest1.rda
3c25d49258d74427e5bce8a7c6c9c973 *extdata/dunkley2006pdunittest2.rda
c1e55275903bcbddfb7b81b35342978a *extdata/dunkley2006pdunittest_20140408.rda
367074e0888ee9628c20d4632b8e96e1 *extdata/marker_atha.rds
18d53e52ea6db4b81acd9617e95f87ab *extdata/marker_dmel.rds
bd3510c3063d2ea0f2277d2eb6586827 *extdata/marker_ggal.rds
936edc99e95331ae22ba372d52277da5 *extdata/marker_hsap.rds
96af76405d2045bda5b8a3fab8bfd976 *extdata/marker_mmus.rds
4236dd0a341f6dddd32722647466d922 *extdata/marker_scer_sgd.rds
2921afad24511e414412e2873cbfd1aa *extdata/marker_scer_uniprot.rds
8d49a1b05cde03398aafbb4894d26840 *extdata/mil.rds
bed5f896b39e01c1a0b2019135630822 *extdata/params.rda
d0a19c03fda86cc058f924b0f44fb6e7 *extdata/params2.rda
c3c0af1f91c653be6e536d96336479ff *extdata/pdres.rda
c5f04687d9d1f7a61104d2eff46c4edb *extdoc/mcmc.Rmd
64614b78b27ee52fc9e2839e9efd8c38 *extdoc/mcmc.md
5dc77813ff7164e70f81bce5db0a5781 *figs/plot2D-hexbin.png
04783d99a253ac699dff2181ac099f07 *figs/plot2D-lda.png
f7ce702e90f975407dc80c88e267afce *figs/plot2D-null-black.png
a50d048de1fca9d3e0e23e7d660815b0 *figs/plot2D-null-cex.png
162db61cf877b1da69835d12d571e963 *figs/plot2D-null-pch-black.png
5ab655c4578b961d235a236aeebc9abc *figs/plot2D-null-pch.png
803ab03012e9d833ce83a2cf1b6c492f *figs/plot2D-null.png
70384b7cbc69329b3995a966b62e682a *figs/plot2D-scree.png
b482de5728207f5baae22402b72ecdcd *figs/plot2D.png
66c359507db4708faecc7fdd307c5457 *help/+5B+2CClustDistList+2CANY+2CANY+2CANY-method.html
66c359507db4708faecc7fdd307c5457 *help/+5B+2CClustDistList+2CANY+2Cmissing+2Cmissing-method.html
59e7e1d11511cb731aa7f96048704984 *help/+5B+2CMCMCChains+2CANY+2CANY+2CANY-method.html
59e7e1d11511cb731aa7f96048704984 *help/+5B+2CMCMCParams+2CANY+2CANY+2CANY-method.html
2fa8a73100a96c397cb83c60d1aca741 *help/+5B+2CMartInstanceList+2CANY+2CANY+2CANY-method.html
2fa8a73100a96c397cb83c60d1aca741 *help/+5B+2CMartInstanceList+2CANY+2CANY-method.html
2fa8a73100a96c397cb83c60d1aca741 *help/+5B+2CMartInstanceList-method.html
66c359507db4708faecc7fdd307c5457 *help/+5B+5B+2CClustDistList+2CANY+2CANY-method.html
66c359507db4708faecc7fdd307c5457 *help/+5B+5B+2CClustDistList+2CANY+2Cmissing-method.html
59e7e1d11511cb731aa7f96048704984 *help/+5B+5B+2CMCMCChains+2CANY+2CANY-method.html
59e7e1d11511cb731aa7f96048704984 *help/+5B+5B+2CMCMCParams+2CANY+2CANY-method.html
2fa8a73100a96c397cb83c60d1aca741 *help/+5B+5B+2CMartInstanceList+2CANY+2CANY-method.html
2fa8a73100a96c397cb83c60d1aca741 *help/+5B+5B+2CMartInstanceList-method.html
c04d77c8ab8d88aa91f3029c2cbdd168 *help/AnIndex
c3b6db0f4eeaa45d10bdb8b8f2b4a408 *help/AnnotationParams-class.html
c3b6db0f4eeaa45d10bdb8b8f2b4a408 *help/AnnotationParams.html
e670d0e4d2e88ab49323d6748fd3a25b *help/ClustDist-class.html
cff92cb56067ecb193fc771b2d354436 *help/ClustDist.html
66c359507db4708faecc7fdd307c5457 *help/ClustDistList-class.html
66c359507db4708faecc7fdd307c5457 *help/ClustDistList.html
1f1327251e69e689d40c49f4208111cd *help/GenRegRes-class.html
1f1327251e69e689d40c49f4208111cd *help/GenRegRes.html
c46a30d752d59b3de9ce926cca282ee4 *help/MAPParams-class.html
c46a30d752d59b3de9ce926cca282ee4 *help/MAPParams.html
59e7e1d11511cb731aa7f96048704984 *help/MCMCChain-class.html
59e7e1d11511cb731aa7f96048704984 *help/MCMCChain.html
59e7e1d11511cb731aa7f96048704984 *help/MCMCChains-class.html
59e7e1d11511cb731aa7f96048704984 *help/MCMCChains.html
59e7e1d11511cb731aa7f96048704984 *help/MCMCParams-class.html
59e7e1d11511cb731aa7f96048704984 *help/MCMCParams.html
59e7e1d11511cb731aa7f96048704984 *help/MCMCSummary-class..html
59e7e1d11511cb731aa7f96048704984 *help/MCMCSummary-class.html
59e7e1d11511cb731aa7f96048704984 *help/MCMCSummary.html
65b08abeeb2e0817dbb072cdc3d4a259 *help/MLearn+2Cformula+2CMSnSet+2CclusteringSchema+2Cmissing-method.html
65b08abeeb2e0817dbb072cdc3d4a259 *help/MLearn+2Cformula+2CMSnSet+2ClearnerSchema+2Cnumeric-method.html
65b08abeeb2e0817dbb072cdc3d4a259 *help/MLearn+2Cformula+2CMSnSet+2ClearnerSchema+2CxvalSpec-method.html
65b08abeeb2e0817dbb072cdc3d4a259 *help/MLearn-methods.html
65b08abeeb2e0817dbb072cdc3d4a259 *help/MLearnMSnSet.html
65b08abeeb2e0817dbb072cdc3d4a259 *help/MSnSetMLean.html
2fa8a73100a96c397cb83c60d1aca741 *help/MartInstance-class.html
2fa8a73100a96c397cb83c60d1aca741 *help/MartInstance.html
2fa8a73100a96c397cb83c60d1aca741 *help/MartInstanceList-class.html
2fa8a73100a96c397cb83c60d1aca741 *help/MartInstanceList.html
5965f7f8b4c87b3fe2e60b854abbd9a6 *help/QSep-class.html
5965f7f8b4c87b3fe2e60b854abbd9a6 *help/QSep.html
874b7185fe6b719f78d8f41764cd7cb7 *help/SpatProtVis-class.html
874b7185fe6b719f78d8f41764cd7cb7 *help/SpatProtVis.html
1f1327251e69e689d40c49f4208111cd *help/ThetaRegRes-class.html
1f1327251e69e689d40c49f4208111cd *help/ThetaRegRes.html
48cdc251b5e53db9cc5b14091ef34c70 *help/addGoAnnotations.html
ad052578ee494030bf318afd6a2f9ae5 *help/addLegend.html
44cfee34e0ca172625aaeecd56fcbb9f *help/addMarkers.html
199f78d46d731ca94de3632cf3dffa9c *help/aliases.rds
c3b6db0f4eeaa45d10bdb8b8f2b4a408 *help/andy2011params.html
2fa8a73100a96c397cb83c60d1aca741 *help/as.data.frame.MartInstance.html
2fa8a73100a96c397cb83c60d1aca741 *help/as.data.frame.MartInstanceList.html
59e7e1d11511cb731aa7f96048704984 *help/chains.html
b8cb65d0ce22ec2291d33a7d654010a6 *help/checkFeatureNamesOverlap.html
100b992f15fc6fbb44b524258226a856 *help/checkFvarOverlap.html
99709c875c27ef444fac004b932bfe7a *help/chi2+2Cmatrix+2Cmatrix-method.html
99709c875c27ef444fac004b932bfe7a *help/chi2+2Cmatrix+2Cnumeric-method.html
99709c875c27ef444fac004b932bfe7a *help/chi2+2Cnumeric+2Cmatrix-method.html
99709c875c27ef444fac004b932bfe7a *help/chi2+2Cnumeric+2Cnumeric-method.html
99709c875c27ef444fac004b932bfe7a *help/chi2-methods.html
99709c875c27ef444fac004b932bfe7a *help/chi2.html
5965f7f8b4c87b3fe2e60b854abbd9a6 *help/class+3A+3AQSep.html
c3b6db0f4eeaa45d10bdb8b8f2b4a408 *help/class+3AAnnotationParams.html
e670d0e4d2e88ab49323d6748fd3a25b *help/class+3AClustDist.html
66c359507db4708faecc7fdd307c5457 *help/class+3AClustDistList.html
1f1327251e69e689d40c49f4208111cd *help/class+3AGenRegRes.html
c46a30d752d59b3de9ce926cca282ee4 *help/class+3AMAPParams.html
59e7e1d11511cb731aa7f96048704984 *help/class+3AMCMCChain.html
59e7e1d11511cb731aa7f96048704984 *help/class+3AMCMCChains.html
59e7e1d11511cb731aa7f96048704984 *help/class+3AMCMCParams.html
59e7e1d11511cb731aa7f96048704984 *help/class+3AMCMCSummary.html
874b7185fe6b719f78d8f41764cd7cb7 *help/class+3ASpatProtVis.html
1f1327251e69e689d40c49f4208111cd *help/class+3AThetaRegRes.html
3927de044b0a70c33f63a263dbf19746 *help/classWeights.html
84908f9b82760800d06657a4f1430ffb *help/col1.html
84908f9b82760800d06657a4f1430ffb *help/col2.html
1f1327251e69e689d40c49f4208111cd *help/combineThetaRegRes.html
84908f9b82760800d06657a4f1430ffb *help/data1.html
84908f9b82760800d06657a4f1430ffb *help/data2.html
dac9507fbdb50dc974595cda71e1ea15 *help/defunct.html
c3b6db0f4eeaa45d10bdb8b8f2b4a408 *help/dunkley2006params.html
b6ede3079441383ff84161dd9b45b06b *help/empPvalues.html
1f1327251e69e689d40c49f4208111cd *help/f1Count+2CGenRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/f1Count+2CThetaRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/f1Count.html
8ef84db0b28fda2c13e7a1fbf3d17dbf *help/fDataToUnknown.html
1f1327251e69e689d40c49f4208111cd *help/favourPrimary.html
2fa8a73100a96c397cb83c60d1aca741 *help/filterAttrs.html
3a6b7989f3b8237693b58c38cc3aff8d *help/filterBinMSnSet.html
f3aa411fdd2a9cc57188dd39da48484c *help/filterMaxMarkers.html
d73b0c706722e0545f52a97e49937bb9 *help/filterMinMarkers.html
73f0c3891d69e392f810a4ee80fe7e3a *help/filterZeroCols.html
73f0c3891d69e392f810a4ee80fe7e3a *help/filterZeroRows.html
483688731e5805668850d0b0d4af9704 *help/flipGoTermId.html
c3b6db0f4eeaa45d10bdb8b8f2b4a408 *help/getAnnotationParams.html
1f1327251e69e689d40c49f4208111cd *help/getF1Scores+2CGenRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/getF1Scores+2CThetaRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/getF1Scores.html
2fa8a73100a96c397cb83c60d1aca741 *help/getFilterList.html
3f8cb9e3e28a0dce87196a715aacfe37 *help/getGOEvidenceCodes.html
e0a09c2148d6ae8f3518734b56b27017 *help/getGOFromFeatures.html
a210da68051157d785726156cfe94319 *help/getLisacol.html
feb4868ca2c8ea64d89b77b829015cd3 *help/getMarkerClasses.html
8ffb56ffad805d16ad095e3d5b212f61 *help/getMarkers.html
2fa8a73100a96c397cb83c60d1aca741 *help/getMartInstanceList.html
2fa8a73100a96c397cb83c60d1aca741 *help/getMartTab.html
3febc430ca3a71394cfbb2bb5d10ce3c *help/getNormDist.html
a210da68051157d785726156cfe94319 *help/getOldcol.html
e83f217b6d871efcce3455535940f160 *help/getParams+2CClustRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/getParams+2CGenRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/getParams+2CThetaRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/getParams.html
f4c0f485db3d3d001f58755887a3ae30 *help/getPredictions.html
1f1327251e69e689d40c49f4208111cd *help/getRegularisedParams+2CGenRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/getRegularisedParams.html
1f1327251e69e689d40c49f4208111cd *help/getRegularizedParams+2CGenRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/getRegularizedParams.html
1f1327251e69e689d40c49f4208111cd *help/getSeed+2CGenRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/getSeed.html
a210da68051157d785726156cfe94319 *help/getStockcol.html
a210da68051157d785726156cfe94319 *help/getStockpch.html
a210da68051157d785726156cfe94319 *help/getUnknowncol.html
a210da68051157d785726156cfe94319 *help/getUnknownpch.html
1f1327251e69e689d40c49f4208111cd *help/getWarnings+2CGenRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/getWarnings.html
d234078c5bf3e41a327a5929d78c1bd1 *help/geweke_test.html
483688731e5805668850d0b0d4af9704 *help/goIdToTerm.html
483688731e5805668850d0b0d4af9704 *help/goTermToId.html
b2c39028fd222fdf6d0d4b7c0f86dc80 *help/highlightOnPlot.html
b2c39028fd222fdf6d0d4b7c0f86dc80 *help/highlightOnPlot3D.html
582d9025e03e57de63ec6bac55680586 *help/isMrkMat.html
582d9025e03e57de63ec6bac55680586 *help/isMrkVec.html
d35288010ac000b603fca1fa4d9d1c45 *help/knnClassification.html
56e4d5151fd950144f03ea19ae8e6f9e *help/knnOptimisation.html
56e4d5151fd950144f03ea19ae8e6f9e *help/knnOptimization.html
d35288010ac000b603fca1fa4d9d1c45 *help/knnPrediction.html
56e4d5151fd950144f03ea19ae8e6f9e *help/knnRegularisation.html
d909657608eaeffad3a2d894648dfeca *help/knntlClassification.html
a5a54df560f63a1d6d0af0fbce85e59d *help/knntlOptimisation.html
be05e27c713ff365046941bea3c81657 *help/ksvmClassification.html
32b2f2f18998a6bf55e694fd308e2ff5 *help/ksvmOptimisation.html
32b2f2f18998a6bf55e694fd308e2ff5 *help/ksvmOptimization.html
be05e27c713ff365046941bea3c81657 *help/ksvmPrediction.html
32b2f2f18998a6bf55e694fd308e2ff5 *help/ksvmRegularisation.html
66c359507db4708faecc7fdd307c5457 *help/lapply+2CClustDistList-method.html
2fa8a73100a96c397cb83c60d1aca741 *help/lapply+2CMartInstanceList+2CANY-method.html
2fa8a73100a96c397cb83c60d1aca741 *help/lapply+2CMartInstanceList-method.html
66c359507db4708faecc7fdd307c5457 *help/length+2CClustDistList-method.html
59e7e1d11511cb731aa7f96048704984 *help/length+2CMCMCChains-method.html
59e7e1d11511cb731aa7f96048704984 *help/length+2CMCMCParams-method.html
e83f217b6d871efcce3455535940f160 *help/levelPlot+2CClustRegRes-method.html
1f1327251e69e689d40c49f4208111cd *help/levelPlot+2CGenRegRes-method.html
5965f7f8b4c87b3fe2e60b854abbd9a6 *help/levelPlot+2CQSep-method.html
1f1327251e69e689d40c49f4208111cd *help/levelPlot.html
c46a30d752d59b3de9ce926cca282ee4 *help/logPosteriors.html
076ec48448aab46566219f5d94463e3d *help/makeGoSet.html
07bee8f9205313e093cea84e7b8c86f6 *help/markerMSnSet.html
582d9025e03e57de63ec6bac55680586 *help/markers.html
d234078c5bf3e41a327a5929d78c1bd1 *help/mcmc-helpers.html
d234078c5bf3e41a327a5929d78c1bd1 *help/mcmc_burn_chains.html
d234078c5bf3e41a327a5929d78c1bd1 *help/mcmc_get_meanComponent.html
d234078c5bf3e41a327a5929d78c1bd1 *help/mcmc_get_meanoutliersProb.html
d234078c5bf3e41a327a5929d78c1bd1 *help/mcmc_get_outliers.html
d234078c5bf3e41a327a5929d78c1bd1 *help/mcmc_pool_chains.html
d234078c5bf3e41a327a5929d78c1bd1 *help/mcmc_thin_chains.html
dac9507fbdb50dc974595cda71e1ea15 *help/minClassScore.html
dad2717297fd0bbd0bc93c6af20ecc8d *help/minMarkers.html
22fc2a33cd9a8618d80513e45fa6d59f *help/mixing_posterior_check.html
aca3365fb1735cccb18954b10e583796 *help/move2Ds.html
a835f996c145a01d6b574437dd35cdf1 *help/mrkConsProfiles.html
582d9025e03e57de63ec6bac55680586 *help/mrkEncoding.html
36a0791a09f65dd1c2fc8cfae6db350e *help/mrkHClust.html
582d9025e03e57de63ec6bac55680586 *help/mrkMatAndVec.html
582d9025e03e57de63ec6bac55680586 *help/mrkMatToVec.html
582d9025e03e57de63ec6bac55680586 *help/mrkVecToMat.html
2fa8a73100a96c397cb83c60d1aca741 *help/nDatasets.html
66c359507db4708faecc7fdd307c5457 *help/names+2CClustDistList-method.html
5965f7f8b4c87b3fe2e60b854abbd9a6 *help/names+2CQSep-method.html
66c359507db4708faecc7fdd307c5457 *help/names+3C-+2CClustDistList+2CANY-method.html
5965f7f8b4c87b3fe2e60b854abbd9a6 *help/names+3C-+2CQSep+2Ccharacter-method.html
ed662db696d7e94e9065f2c4c5512654 *help/nbClassification.html
a10ddad9d00ba8f1f2c133a4ec563bdf *help/nbOptimisation.html
a10ddad9d00ba8f1f2c133a4ec563bdf *help/nbOptimization.html
ed662db696d7e94e9065f2c4c5512654 *help/nbPrediction.html
a10ddad9d00ba8f1f2c133a4ec563bdf *help/nbRegularisation.html
e875912da3bcb93c2fd2a1dce77ee0ce *help/nicheMeans2D.html
6a3f393df53284e4170c3de0a1336788 *help/nndist+2CMSnSet+2Cmissing-method.html
6a3f393df53284e4170c3de0a1336788 *help/nndist+2Cmatrix+2Cmatrix-method.html
6a3f393df53284e4170c3de0a1336788 *help/nndist+2Cmatrix+2Cmissing-method.html
6a3f393df53284e4170c3de0a1336788 *help/nndist-methods.html
6a3f393df53284e4170c3de0a1336788 *help/nndist.html
13cbf27f57887d9c59ce5a58f95b0d91 *help/nnetClassification.html
aa9b682b07dd1f440eb563d3a705109f *help/nnetOptimisation.html
aa9b682b07dd1f440eb563d3a705109f *help/nnetOptimization.html
13cbf27f57887d9c59ce5a58f95b0d91 *help/nnetPrediction.html
aa9b682b07dd1f440eb563d3a705109f *help/nnetRegularisation.html
6fa6ec0b8efc776e320b5841d63107c9 *help/orderGoAnnotations.html
2bf4a08741b6a4e53a8ef6c3988f20fd *help/orgQuants.html
dac9507fbdb50dc974595cda71e1ea15 *help/pRoloc-defunct.html
dac9507fbdb50dc974595cda71e1ea15 *help/pRoloc-deprecated.html
aab7bf2f8fcd317f8531274799909869 *help/pRoloc.rdb
c04bc3dbd64338970028efa59c008d5e *help/pRoloc.rdx
451cf8d9e949d9a90ce370953dff1222 *help/pRolocmarkers.html
a36a7099ab896b719f5094e409f6aefc *help/paths.rds
e3005396d52463256cfc2578c6bb2e77 *help/perTurboClassification.html
726e5436883f9616dc7e798da7459052 *help/perTurboOptimisation.html
726e5436883f9616dc7e798da7459052 *help/perTurboOptimization.html
f04bfa3f868a9c30026c329b9e479759 *help/phenoDisco.html
e670d0e4d2e88ab49323d6748fd3a25b *help/plot+2CClustDist+2CMSnSet-method.html
66c359507db4708faecc7fdd307c5457 *help/plot+2CClustDistList+2Cmissing-method.html
e83f217b6d871efcce3455535940f160 *help/plot+2CClustRegRes+2Cmissing-method.html
1f1327251e69e689d40c49f4208111cd *help/plot+2CGenRegRes+2Cmissing-method.html
d234078c5bf3e41a327a5929d78c1bd1 *help/plot+2CMCMCParams+2Ccharacter-method.html
5965f7f8b4c87b3fe2e60b854abbd9a6 *help/plot+2CQSep+2Cmissing-method.html
5965f7f8b4c87b3fe2e60b854abbd9a6 *help/plot+2CQSep-method.html
874b7185fe6b719f78d8f41764cd7cb7 *help/plot+2CSpatProtVis+2Cmissing-method.html
1f1327251e69e689d40c49f4208111cd *help/plot+2CThetaRegRes+2Cmissing-method.html
b4c87856e7ea5f07f03f55130b8ba31a *help/plot2D.html
b4c87856e7ea5f07f03f55130b8ba31a *help/plot2Dmethods.html
84908f9b82760800d06657a4f1430ffb *help/plot2Ds.html
b4c87856e7ea5f07f03f55130b8ba31a *help/plot3D+2CMSnSet-method.html
b8c108f0513ca921d4bf61d0d2f1713f *help/plotConsProfiles.html
94060ad8e7a9c7ad7d53a49987f0dcf1 *help/plotDist.html
b334ce53f05a66c7e96e373020ec9336 *help/plotEllipse.html
52434bb7fcdd4f2ac1320606c7f93d3b *help/plsdaClassification.html
7349ea338a90f0169b7ea0904baa4913 *help/plsdaOptimisation.html
7349ea338a90f0169b7ea0904baa4913 *help/plsdaOptimization.html
52434bb7fcdd4f2ac1320606c7f93d3b *help/plsdaPrediction.html
7349ea338a90f0169b7ea0904baa4913 *help/plsdaRegularisation.html
483688731e5805668850d0b0d4af9704 *help/prettyGoTermId.html
6fb96bbc1a1c2668e32ac9c6ce629d36 *help/rfClassification.html
24d30958811c85822d06011e3d6f0db3 *help/rfOptimisation.html
24d30958811c85822d06011e3d6f0db3 *help/rfOptimization.html
6fb96bbc1a1c2668e32ac9c6ce629d36 *help/rfPrediction.html
24d30958811c85822d06011e3d6f0db3 *help/rfRegularisation.html
8143982e98c19313ef3943046da4cb2e *help/sampleMSnSet.html
66c359507db4708faecc7fdd307c5457 *help/sapply+2CClustDistList-method.html
2fa8a73100a96c397cb83c60d1aca741 *help/sapply+2CMartInstanceList+2CANY-method.html
2fa8a73100a96c397cb83c60d1aca741 *help/sapply+2CMartInstanceList-method.html
c3b6db0f4eeaa45d10bdb8b8f2b4a408 *help/setAnnotationParams.html
a210da68051157d785726156cfe94319 *help/setLisacol.html
a210da68051157d785726156cfe94319 *help/setOldcol.html
a210da68051157d785726156cfe94319 *help/setStockcol.html
a210da68051157d785726156cfe94319 *help/setStockpch.html
a210da68051157d785726156cfe94319 *help/setUnknowncol.html
a210da68051157d785726156cfe94319 *help/setUnknownpch.html
c3b6db0f4eeaa45d10bdb8b8f2b4a408 *help/show+2CAnnotationParams-method.html
e670d0e4d2e88ab49323d6748fd3a25b *help/show+2CClustDist-method.html
66c359507db4708faecc7fdd307c5457 *help/show+2CClustDistList-method.html
e83f217b6d871efcce3455535940f160 *help/show+2CClustRegRes-method.html
59e7e1d11511cb731aa7f96048704984 *help/show+2CComponentParam-method.html
1f1327251e69e689d40c49f4208111cd *help/show+2CGenRegRes-method.html
c46a30d752d59b3de9ce926cca282ee4 *help/show+2CMAPParams-method.html
59e7e1d11511cb731aa7f96048704984 *help/show+2CMCMCChain-method.html
59e7e1d11511cb731aa7f96048704984 *help/show+2CMCMCChains-method.html
59e7e1d11511cb731aa7f96048704984 *help/show+2CMCMCParams-method.html
2fa8a73100a96c397cb83c60d1aca741 *help/show+2CMartInstance-method.html
5965f7f8b4c87b3fe2e60b854abbd9a6 *help/show+2CQSep-method.html
874b7185fe6b719f78d8f41764cd7cb7 *help/show+2CSpatProtVis-method.html
1f1327251e69e689d40c49f4208111cd *help/show+2CThetaRegRes-method.html
3f8cb9e3e28a0dce87196a715aacfe37 *help/showGOEvidenceCodes.html
582d9025e03e57de63ec6bac55680586 *help/showMrkMat.html
6afc98bffcd9609fd494702b2aadaeef *help/spatial2D.html
ddc018700291ae383d864751a2171b95 *help/subsetMarkers.html
5965f7f8b4c87b3fe2e60b854abbd9a6 *help/summary+2CQSep-method.html
6d690544a4287554424521e6e943f3b9 *help/svmClassification.html
3305e2e8fac0eb59b85ce898cde9b2fc *help/svmOptimisation.html
3305e2e8fac0eb59b85ce898cde9b2fc *help/svmOptimization.html
6d690544a4287554424521e6e943f3b9 *help/svmPrediction.html
3305e2e8fac0eb59b85ce898cde9b2fc *help/svmRegularisation.html
c46a30d752d59b3de9ce926cca282ee4 *help/tagm-map.html
b55afb0cd83270fc57d70dcf8b9ce859 *help/tagm-mcmc.html
c46a30d752d59b3de9ce926cca282ee4 *help/tagmMapPredict.html
c46a30d752d59b3de9ce926cca282ee4 *help/tagmMapTrain.html
b55afb0cd83270fc57d70dcf8b9ce859 *help/tagmMcmcPredict.html
b55afb0cd83270fc57d70dcf8b9ce859 *help/tagmMcmcProcess.html
b55afb0cd83270fc57d70dcf8b9ce859 *help/tagmMcmcTrain.html
b55afb0cd83270fc57d70dcf8b9ce859 *help/tagmPredict.html
e7d12a40c45650845eb0c44593044162 *help/testMSnSet.html
fb9da99910bb482faa7bec836d46f7d9 *help/testMarkers.html
3ed2ccd5c3680e33596d0bacf98ed482 *help/thetas.html
e83f217b6d871efcce3455535940f160 *help/undocumented.html
07bee8f9205313e093cea84e7b8c86f6 *help/unknownMSnSet.html
54e3110547edce806cff2ddb019acf26 *help/zerosInBinMSnSet.html
2019f12019e1020b7e58da1d422a947b *html/00Index.html
226100b56d4e04d90ba4306fb24f9182 *html/AnnotationParams-class.html
83b2907bf783b3d40cddf39abc145fce *html/ClustDist-class.html
d2d943b075d214dcb8b212b34c1c566d *html/ClustDistList-class.html
e33b54b091c70dea1898f9be813b032e *html/GenRegRes-class.html
8729607f23e584456984f3d3f3e74b45 *html/MCMCParams.html
12be9e7e6c1cc20850439bcb0c3d2928 *html/MLearn-methods.html
5298039d712b9395cc57f82be9ea4095 *html/MartInstance-class.html
42457f6143db0d8031d65c1005f72a68 *html/QSep-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
e82be7e7f1838f3f9309e08404320887 *html/SpatProtVis-class.html
8753b4512991eb14959183d6b055e030 *html/addGoAnnotations.html
c0cef98701d6266b58eb52979f2c853b *html/addLegend.html
5b203b6c261e52e769175b7177ba9656 *html/addMarkers.html
1bc39f7676ea82ea2c4f1cba3e2a9e9d *html/checkFeatureNamesOverlap.html
be886b7714470abe7d639ffb50acb763 *html/checkFvarOverlap.html
57f44fd18745dd4f7f284d9ddfc47eff *html/chi2-methods.html
f28f98c12e20c5ae0ad01fb60b9b8937 *html/classWeights.html
3de41b48cae772cf18e5a03a14dcf033 *html/clustDist.html
2bf269632e8d7c034aba5cbc2594e5aa *html/defunct.html
40296fce4c42c34b0d65ce81c45910fe *html/empPvalues.html
7f051a929dd5c7881b64620e85983358 *html/fDataToUnknown.html
2b8363dd3c9558487cb50726107275c8 *html/filterBinMSnSet.html
695d1fa1997bd634f3e7b0c7affd2cd1 *html/filterMaxMarkers.html
ff2c651fe6abbfeb27c0e2039be7a488 *html/filterMinMarkers.html
4044935d408d7b9965392acfbe3407f6 *html/filterZeroCols.html
67e7b7c967a6d8dac629b2e45cbc342b *html/getGOFromFeatures.html
d3998e3d45d8a85f901f4893dd9bd072 *html/getMarkerClasses.html
b18037937136995bc53579fcc11c7377 *html/getMarkers.html
ef8f8e11651bd89c90da8abe1230205e *html/getNormDist.html
76784fd2f6bae83bcd39f18825694138 *html/getPredictions.html
12b02afbab5d76160d63610e94a4395a *html/getStockcol.html
4c6821930abf916fc21caacbea7c7a60 *html/goIdToTerm.html
a32e0b5d4d1f3148c2ea7d84f0ec4749 *html/highlightOnPlot.html
62272a762dc1f1374cb2fab3be08366b *html/knnClassification.html
5081dc4c67a237e8aabc33d3731f8c9b *html/knnOptimisation.html
ae24f81f6901ab8025854d6e51740ee0 *html/knntlClassification.html
b263308a095c77f16fbda2a1951b6ebd *html/knntlOptimisation.html
0cda38e3349369699c69efb823593019 *html/ksvmClassification.html
f51b1451d4cc766138518a041021a8f4 *html/ksvmOptimisation.html
20098081065f006b9d396a8335ce692c *html/makeGoSet.html
ea29bcf35a3d1c2eb593014a17348977 *html/markerMSnSet.html
87507fc079beada242a0dc2e5e7dfa25 *html/markers.html
4ca46be76eb700cdbcaa2f928d342887 *html/mcmc-helpers.html
57eac34f7fd429ccac8d005e7ae0320e *html/minMarkers.html
c8206f6fa9e5c7ffc3c6f215215dd4ee *html/mixing_posterior_check.html
bdf99c0ffa999ed36ad51bef8754bb7c *html/move2Ds.html
70f41c706b645b4b9cd08b5a2dfb6c47 *html/mrkConsProfiles.html
3c4249b1f83577efd81169596961178b *html/mrkHClust.html
205c12080137776f93af29468ec6248c *html/nbClassification.html
3a731cda2798fcdc863f4218836790fa *html/nbOptimisation.html
399a115daaaf1c11dfd778719f08a2c1 *html/nicheMeans2D.html
1a1b7e7aedbc1d7fbf430b4070adfab6 *html/nndist-methods.html
ec677d8ad3b731eeb59426f4d806584f *html/nnetClassification.html
0d1299107c91add20ccba85e9e09d96a *html/nnetOptimisation.html
d8b059c9b00b73d296858bcc9a00e134 *html/orderGoAnnotations.html
cfd717971e981e41fbed04caef0a466d *html/orgQuants.html
fbed0b83476f0de816418c2335185a0e *html/pRolocmarkers.html
a496dc3287ce8c061651b5f480e4e2dd *html/perTurboClassification.html
44e1d55f3c82249a5af29967210bf68c *html/perTurboOptimisation.html
c4c955e34494bf026aa4c9b351e98bf7 *html/phenoDisco.html
b9ae5403c22f9abf34835b575c4db6a7 *html/plot2D.html
2ec9735d686f72c9947eca44505e4ebb *html/plot2Ds.html
77c062ec20adec25f4c80024ab7150db *html/plotConsProfiles.html
39a945960c1698a2f0f5db3ac11eecfa *html/plotDist.html
1737d60b6612f28c11f0c5fcec542b41 *html/plotEllipse.html
f42f526233f12b89e073907c5883f950 *html/plsdaClassification.html
3ddb4aa2027a9ed5c68db9831f6004a0 *html/plsdaOptimisation.html
f1e9f0ed66c0f0a3008169b13d766dc6 *html/rfClassification.html
c47de98dae2a605fe78a6a23e880d3a3 *html/rfOptimisation.html
e4270a1f1d590406b601774f46d212aa *html/sampleMSnSet.html
1fe9d663c4b117bb27a0695145ec6620 *html/showGOEvidenceCodes.html
75df406edaf1f97f8c14827c8f460c3e *html/spatial2D.html
53a24529684dbf425c04b4db73256cdd *html/subsetMarkers.html
1770a690186cc2b7a13d95927e98534a *html/svmClassification.html
96a0053518da82e40e964db52a2b537e *html/svmOptimisation.html
17af7850b49c91f7d3998b443dbe52d5 *html/tagm-map.html
65ffe4865bb1fc111f98a9393f3b189b *html/tagm-mcmc.html
680150353344708618e7b6547b3ecdd7 *html/testMSnSet.html
257f2f1eb3f64911ac3185408a319b41 *html/testMarkers.html
cee2a4165d0a724e0c2a0436f4b99555 *html/thetas.html
1bba7c09a027bd272f11d30b8e11bb1e *html/undocumented.html
70fd4e5bbcfe8bac89159440e3a0ba1b *html/zerosInBinMSnSet.html
9dfcf6c87c177dba34e1065ee73d770b *libs/i386/pRoloc.dll
5dec1451f6cf9a2b494e2a995a09a779 *libs/x64/pRoloc.dll
342a22b2c9d100fc51eefb5b18a04430 *scripts/biomart.R
9dc7ccdb8f8ad7402fcd488b5380bef5 *scripts/dynamics.R
38c12310cdd154a67620262b5dc9f01c *scripts/test_pd.R
