summarize {paxtoolsr} | R Documentation

## Summarize a BioPAX file

### Description

This function provides a summary of BioPAX classes.

### Usage

    summarize(inputFile)

### Arguments

`inputFile` | a string of the name of the input BioPAX OWL file

### Details

BioPAX classes are defined by the BioPAX specification: http://www.biopax.org/

### Value

list with BioPAX class counts

### Examples

    summary <- summarize(system.file("extdata", "raf_map_kinase_cascade_reactome.owl",
    package="paxtoolsr"))

[Package paxtoolsr version 1.28.0 Index]