Package: paxtoolsr
Type: Package
Title: Access Pathways from Multiple Databases Through BioPAX and
        Pathway Commons
Version: 1.28.0
Date: 2021-10-25
Authors@R: person("Augustin", "Luna", email = "lunaa@cbio.mskcc.org",
                  role = c("aut", "cre"))
Imports: utils, httr, igraph, plyr, rjson, R.utils, jsonlite, readr,
        rappdirs
Depends: R (>= 3.2), rJava (>= 0.9-8), methods, XML
Suggests: testthat, knitr, BiocStyle, formatR, rmarkdown, RColorBrewer,
        foreach, doSNOW, parallel, org.Hs.eg.db, clusterProfiler
SystemRequirements: Java (>= 1.6)
License: LGPL-3
Description: The package provides a set of R functions for interacting with
    BioPAX OWL files using Paxtools and the querying Pathway Commons (PC) molecular
    interaction database. Pathway Commons is a project by the Memorial 
    Sloan-Kettering Cancer Center (MSKCC), Dana-Farber Cancer Institute (DFCI), 
    and the University of Toronto. Pathway Commons databases include: BIND, 
    BioGRID, CORUM, CTD, DIP, DrugBank, HPRD, HumanCyc, IntAct, KEGG,
    MirTarBase, Panther, PhosphoSitePlus, Reactome, RECON, TRANSFAC.
VignetteBuilder: knitr
biocViews: GeneSetEnrichment, GraphAndNetwork, Pathways, Software,
        SystemsBiology, NetworkEnrichment, Network, Reactome, KEGG
URL: https://github.com/BioPAX/paxtoolsr
Encoding: UTF-8
RoxygenNote: 7.1.1
git_url: https://git.bioconductor.org/packages/paxtoolsr
git_branch: RELEASE_3_14
git_last_commit: ccd6010
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
NeedsCompilation: no
Packaged: 2021-10-27 03:08:55 UTC; biocbuild
Author: Augustin Luna [aut, cre]
Maintainer: Augustin Luna <lunaa@cbio.mskcc.org>
Built: R 4.1.1; ; 2021-10-27 12:33:45 UTC; windows
