integrateFIR {peakPantheR} | R Documentation

## Integrate fallback integration regions

### Description

Integrate region defined in FIR if a feature is not found

### Usage

    integrateFIR(rawSpec, FIR, foundPeakTable, verbose = TRUE)

### Arguments

`rawSpec` | an `OnDiskMSnExp-class`
`FIR` | (data.frame) Fallback Integration Regions (FIR) to integrate when a feature is not found. Compounds as row are identical to the targeted features, columns are `rtMin` (float in seconds), `rtMax` (float in seconds), `mzMin` (float), `mzMax` (float)
`foundPeakTable` | a `data.frame` as generated by findTargetFeatures, with features as rows and peak properties as columns. The following columns are mandatory: `found`, `is_filled`, `mz`, `mzMin`, `mzMax`, `rt`, `rtMin`, `rtMax`, `peakArea`, `peakAreaRaw`, `maxIntMeasured`, `maxIntPredicted`.
`verbose` | (bool) if TRUE message progress

### Value

an updated foundPeakTable with FIR integration values

[Package peakPantheR version 1.8.0 Index]