spectraPaths_and_metadata_UI_helper {peakPantheR} | R Documentation

## UI data import helper - prepare file paths and metadata

### Description

Return spectraPaths and spectraMetadata from a .csv file (if available). If reading from the spectraMetadata file, the spectraPaths are taken from the 'filepath' column

### Usage

    spectraPaths_and_metadata_UI_helper(
        spectraPaths = NULL,
        spectraMetadataPath = NULL
    )

### Arguments

`spectraPaths` | NULL or character vector of spectra file paths, to set samples to process
`spectraMetadataPath` | NULL or path to a csv of spectra metadata, with spectra as row and metadata as columns. (spectraPaths in column 'filepath')

### Value

spectraPaths (str) and spectraMetadata (DataFrame or NULL) read from the CSV file

### Examples

    ## Input data
    # spectraPath
    input_spectraPaths    <- c('./path/file1', './path/file2', './path/file3')

    # spectraMetadata
    input_spectraMetadata <- data.frame(matrix(data=c(input_spectraPaths,
                                c('a','b','c')), nrow=3, ncol=2,
                                dimnames=list(c(),c('filepath', 'testcol')),
                                byrow=FALSE), stringsAsFactors=FALSE)

    # temporary file location
    spectraMetaPath <- tempfile(pattern="file", tmpdir=tempdir(), fileext='.csv')
    # save csv
    utils::write.csv(input_spectraMetadata,
                        file=spectraMetaPath,
                        row.names=FALSE)

    # load data from CSV
    spectraPaths_and_metadata_UI_helper(spectraPaths = NULL,
                                        spectraMetadataPath = spectraMetaPath)

[Package peakPantheR version 1.8.0 Index]