scrna_evalPlot_overall {pipeComp} | R Documentation

## scrna_evalPlot_overall

### Description

Plots a multi-level summary heatmap of many analyses of the 'scrna_pipeline'.

### Usage

    scrna_evalPlot_overall(
      res,
      agg.by = NULL,
      width = NULL,
      datasets_as_columnNames = TRUE,
      rowAnnoColors = NULL,
      column_names_gp = gpar(fontsize = 10),
      column_title_gp = gpar(fontsize = 12),
      heatmap_legend_param = list(by_row = TRUE, direction = "horizontal", nrow = 1),
      ...
    )

### Arguments

`res` | Aggregated pipeline results (i.e. the output of 'runPipeline' or 'aggregateResults')
`agg.by` | The paramters by which to aggregate.
`width` | The width of individual heatmap bodies.
`datasets_as_columnNames` | Logical; whether dataset names should be printed below the columns (except for silhouette) rather than using a legend.
`rowAnnoColors` | Optional list of colors for the row annotation variables (passed to 'HeatmapAnnotation(col=...)')
`column_names_gp` | Passed to each calls to 'Heatmap'
`column_title_gp` | Passed to each calls to 'Heatmap'
`heatmap_legend_param` | Passed to each calls to 'Heatmap'
`...` | Passed to each calls to 'Heatmap'

### Value

A HeatmapList

### Examples

    library(ComplexHeatmap)
    data("exampleResults")
    h <- scrna_evalPlot_overall(exampleResults)
    draw(h, heatmap_legend_side="bottom")

[Package pipeComp version 1.4.0 Index]