selModel {pram} | R Documentation

## Select transcript models

### Description

Select transcript models

### Usage

    selModel(fin_gtf, fout_gtf, min_n_exon = 2, min_tr_len = 200,
        info_keys = c("transcript_id"))

### Arguments

`fin_gtf` | Character of an input GTF file that contains transcript models. Required to have 'transcript_id' in the attribute column (column 9)
`fout_gtf` | Character of an output GTF file that contains selected transcript models
`min_n_exon` | Minimium number of exons a transcript model required to have Default: 2
`min_tr_len` | Minimium length (bp) of exon(s) and intron(s) a transcript model required to have Default: 200
`info_keys` | A vector of characters defining the attributes in input GTF file's column 9 to be saved in the output GTF file. 'transcript_id' will always be saved. Default: c( 'transcript_id' )

### Value

None

### Examples

    fin_gtf = system.file('extdata/gtf/selModel_in.gtf', package='pram')

    fout_gtf = tempfile(fileext='.gtf')

    selModel(fin_gtf, fout_gtf)

[Package pram version 1.10.0 Index]