tfbsList {preciseTAD} | R Documentation

## A list of the chromosomal coordinates for 26 transcription factor binding sites from the Gm12878 cell line

### Description

A GRangesList containing 26 GRanges objects each with the following elements

seqnames

  The chromosome number

ranges

  IRanges object with start and end coordinates for each TFBS

strand

  empty column

coverage

  a metadata column with peak strength values at each site

### Usage

    tfbsList

### Format

An object of class `CompressedGRangesList` of length 26.

### Value

A GrangeList

### Source

Data obtained from ENCODE. ENCODE integrative analysis (PMID: 22955616; PMCID: PMC3439153) ENCODE portal (PMID: 29126249; PMCID: PMC5753278) Available at https://www.encodeproject.org/

[Package preciseTAD version 1.4.0 Index]