promoterAnnotation.gencode.v34.subset {proActiv} | R Documentation

## Promoter annotation for Gencode.v34 (subset)

### Description

Promoter annotation for Gencode.v34 (chr1:10,000,000 - 30,000,000)

### Usage

    promoterAnnotation.gencode.v34.subset

### Format

A PromoterAnnotation (S4 Class) object containing all promoter annotation objects for Gencode.v34 chr1:10,000,000-30,000,000. The object has 3 slots:

intronRanges

  A GRanges object of 4,523 ranges corresponding to introns, annotated with the associated transcript.

promoterIdMapping

  The id mapping between transcript names, promoter ids and gene ids for Gencode v34.

promoterCoordinates

  A GRanges object of 1,380 ranges showing the tss coordinate for each promoter of Gencode v34 chr1:10,000,000-30,000,000, annotated with the associated gene id, coordinate of the 3' end of the first reduced exon, and intron id.

[Package proActiv version 1.4.0 Index]