model_mouse_full {progeny} | R Documentation

## The full mouse linear model underlying PROGENy

### Description

MGI gene symbols in rows, pathways in columns. Pathway activity inference works by matrix multiplication of gene expression with the model.

### Format

The full mouse model contains 17426 genes, associated pathways, weight and the p-value.

gene

  gene names in HGNC symbols

pathway

  names of PROGENy pathways

weight

  z-scores for a given gene

p.value

  significance of gene in a pathway

### Source

https://www.ncbi.nlm.nih.gov/pubmed/31525460

### Examples

    get("model_mouse_full", envir = .GlobalEnv)

[Package progeny version 1.16.0 Index]