listSplicingAnnotations {psichomics} | R Documentation

## List alternative splicing annotations

### Description

List alternative splicing annotations

### Usage

    listSplicingAnnotations(
      species = NULL,
      assembly = NULL,
      date = NULL,
      cache = getAnnotationHubOption("CACHE"),
      group = FALSE
    )

### Arguments

`species` | Character: filter results by species (regular expression)
`assembly` | Character: filter results by assembly (regular expression)
`date` | Character: filter results by date (regular expression)
`cache` | Character: path to `AnnotationHub` cache (used to load alternative splicing event annotation)
`group` | Boolean: group values based on data provider?

### Value

Named character vector with splicing annotation names

### See Also

Other functions for PSI quantification: `filterPSI()`, `getSplicingEventTypes()`, `loadAnnotation()`, `plotRowStats()`, `quantifySplicing()`

### Examples

    listSplicingAnnotations() # Return all alternative splicing annotations
    listSplicingAnnotations(assembly="hg19") # Search for hg19 annotation
    listSplicingAnnotations(assembly="hg38") # Search for hg38 annotation
    listSplicingAnnotations(date="201(7|8)") # Search for 2017 or 2018 annotation

[Package psichomics version 1.20.2 Index]