plot_overrep_reads {qckitfastq} | R Documentation

## Plot the top 5 seqeunces

### Description

Plot the top 5 seqeunces

### Usage

    plot_overrep_reads(overrep_reads, output_file = NA)

### Arguments

`overrep_reads` | the table that sorts the sequence content and corresponding counts in descending order
`output_file` | File to save plot to. Will not write to file if NA. Default NA.

### Value

plot of the top 5 overrepresented sequences

### Examples

    infile <- system.file("extdata", "10^5_reads_test.fq.gz", package = "qckitfastq")
    overrep_df <- overrep_reads(infile)
    plot_overrep_reads(overrep_df)

[Package qckitfastq version 1.10.0 Index]