ti_quant_sim1700mixtures {quantiseqr} | R Documentation

## quanTIseq output for the simulation data of 1700 mixtures for RNA-seq data

### Description

quanTIseq output for the simulation data of 1700 mixtures for RNA-seq data

### Details

quanTIseq output for the simulation data of 1700 mixtures for RNA-seq data, stored as a data.frame with 1700 rows (all the single instances of the different mixtures) as returned by `run_quantiseq()`. Column names, accordingly, contain the names of the component of the TIL10 signature, namely "B.cells", "Macrophages.M1", "Macrophages.M2", "Monocytes", "Neutrophils", "NK.cells", "T.cells.CD4", "T.cells.CD8", "Tregs", "Dendritic.cells", and "Other" (indicating for example a proxy for the amount of tumor tissue).

This can be compared (see Vignette for an example) to the ground truth information on the components of the mixtures.

### References

Finotello, F., Mayer, C., Plattner, C. et al. Correction to: Molecular and pharmacological modulators of the tumor immune contexture revealed by deconvolution of RNA-seq data. Genome Med 11, 50 (2019). https://doi.org/10.1186/s13073-019-0655-5

[Package quantiseqr version 1.2.0 Index]