plotDomainogramNearViewpoint {r3Cseq} | R Documentation

## Plot domainogram of interaction regions near the viewpoint

### Description

Plot domainogram of interaction regions near the viewpoint

### Usage

    plotDomainogramNearViewpoint(object,smoothing.parameter=0.1,distance=5e5,maximum_window=25e3,view=c("experiment","control","both"))

### Arguments

`object` | r3Cseq or r3CseqInBatch object
`smoothing.parameter` | A level at which cubic smoothing spline for the spar (see vsmooth.spline) input parameter. Must be in (0.06,0.4] (default=0.1)
`distance` | Numeric. The distance relative to the viewpoint (default=5e5)
`maximum_window` | Numeric. The maximum windowing (default=25e3). We normally compute the interaction regions per window starting from 2Kb to maximum window (default=25kb) to make the interaction matrix for visualizing the domainogram.
`view` | character. The selected view of data (default="experiment")

### Value

Plots of domainogram for interaction regions close to the viewpoint

### Author(s)

S. Thongjuea

### See Also

`plotOverviewInteractions`, `plotInteractionsPerChromosome`, `plotInteractionsNearViewpoint`

### Examples

    	# See the vignette

[Package r3Cseq version 1.40.0 Index]