getBatchInteractions {r3Cseq} | R Documentation

## calculate z-score, assign p-value and q-value for each interaction region for replicates data sets

### Description

Calculate z-score, assign p-value and q-value to each interaction regions for replicates data sets

### Usage

    getBatchInteractions(object,method=c("union","intersection"),smoothing.parameter=0.1,fdr=0.05)

### Arguments

`object` | r3Cseq object
`method` | character. The method for combining biological replicates for 3C-Seq analysis (default = "union")
`smoothing.parameter` | A level at which cubic smoothing spline for the spar (see vsmooth.spline) input parameter. Must be in (0.06,0.4] (default=0.1)
`fdr` | A level at which to control the FDR. Must be in (0,1] (default=0.05)

### Value

The interaction regions show in the RangedData

### Author(s)

S. Thongjuea

### See Also

getInteractions vsmooth.spline

### Examples

     #See the vignette

[Package r3Cseq version 1.40.0 Index]