ae075240be742c0969aad9c94e6a5e31 *CITATION
e77ef704aad9cd0cbe3e3d28accf0805 *DESCRIPTION
83e32a02102bd5db99b1abe76e72e452 *INDEX
a523b9c2202dc7c62af036b96372c6f0 *Meta/Rd.rds
a12a537f8f7d3087e6534c6fdaad756a *Meta/data.rds
8503e676975364d771072956cdbca633 *Meta/features.rds
52739fa99b99eb3057779bcc1eae85b5 *Meta/hsearch.rds
70033f65992e019f209e693d89b0dd4e *Meta/links.rds
5a1263314f7cc22251af0cc4661b742b *Meta/nsInfo.rds
76ddcbaa329be4892a19096b3ca69767 *Meta/package.rds
b1f1ecc585b4deb498f583f9d387a730 *Meta/vignette.rds
4288c4c8188fc5afb490a746548c7985 *NAMESPACE
88799e12a0bcb0bfc36b476bcb5951ad *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/rTRM
472b0f0522363edf19a1edba02774c32 *R/rTRM.rdb
da9ffd24403bf92cab41026630d3701c *R/rTRM.rdx
39cf1ac4f3cf9c8cc4705db309db9578 *data/biogrid_hs.rda
ad0a8c78b1877871d539d9de7f700ea3 *data/biogrid_mm.rda
f246fde7976b255f72367afee71bf9d9 *data/datalist
2bd1f5b9fc49bd5ba9911be8dd79973a *db/database.db
7bc50520b073498ef45af836fdb403ca *doc/Introduction.R
e1ea1c20ccf4c32cc3b492e5e92e843d *doc/Introduction.Rmd
7f30e9e3b01f496a03dda63fa72203f7 *doc/Introduction.html
6cff618e0b11e2abca74739e6272a2ae *doc/index.html
98b9ba03259ae6d5fc4516e7a658a10a *extra/ESC-expressed.txt
f658dbb8940b92bfdafc3dcf2cdb698f *extra/ESC_Sox2_peaks.txt
fbb496fd5991c64b1437c46008ae2c4a *extra/example.rda
ef10b0ee264bece1a4bc5de1d57d5102 *extra/pwm_mm_logn.rda
437a3b466c73481572d3acda987eacef *extra/sox2_enr.rda
8bf034224b0f19bbbb6cb98c90e979af *extra/sox2_motif_list.rda
380492bb98fe9ecd48241bc9ab42771c *extra/test.R
4fd5f8a7026274a26f8077d8a56011be *help/AnIndex
6216a997442e0c95d474d0fb9d546479 *help/aliases.rds
fe35b996144367f5fde3e9d105a8371d *help/annotateFreq.html
f5fd535b2202bdce4eaec1ace2de5709 *help/annotateModule.html
3a2061db2ed4931bd5e1c9359244ddd9 *help/annotateTRM.html
16efc5b2181796ef0be8a5e261976cf7 *help/biogrid_hs.html
e3b34ade321aed44c1d2dd8c4c112068 *help/biogrid_mm.html
73e80ba100af185e5bc1c0bde55e972e *help/findTRM.html
be7bda1d9bb2729827c2901c758c9542 *help/getAnnotations.html
395f18d24d2d7f1c5fd017e0b54a09c2 *help/getBiogridData.html
2476b191b01c3f47d3cc7d6474c48ce5 *help/getConcentricList.html
a2716a7963e197258c81b2a1772a18d8 *help/getLargestComp.html
2d5764048216f02cfe2950cbc5c9ba81 *help/getMaps.html
8d3800be6495e8467c75233d82a62a0e *help/getMatrices.html
18acba3f834c1dc91c0c7fc6ea7b70a8 *help/getMotifsFromEntrezgene.html
1822c193a47487e376c0dc758b337c65 *help/getMotifsFromSymbol.html
c78d249979e8959660aa15a05bb622b3 *help/getOrthologFromMatrix.html
e8e3f92f96812f63b0f2ce8f3353549d *help/getOrthologs.html
3ebc42cf2f601f824cf586b49d16b337 *help/getOrthologsFromBiomart.html
bea14401f09d61b11b32a164d4fc6d95 *help/getSequencesFromGenome.html
c6566ecc4ad14dc20d6ab2519a0b2435 *help/getSimilarityMatrix.html
788794cabab9e4561045c7d72afd1602 *help/getTFclass.html
983245b7f62cf78500e850b748d94baa *help/getTFclassFromEntrezgene.html
70541d6787f9759db778d56adc03f8c9 *help/getTFterms.html
eae9fb3ad36192d35a992f06bc6763e0 *help/initBiomart.html
112c51b19980c40086d9274c1d9c0acd *help/layout.arc.html
5959a5d71a9a1ae4a593cc9306a8d7e3 *help/layout.concentric.html
29be31783b237b91609760c7b8f864ae *help/paths.rds
32bc4059b243adf7da7b15d891f2d3bd *help/plotDegree.html
6e15a66022c8f5447d3984670fd469ba *help/plotGraph.html
35a6ddd0219399c103091ccb8bf0eefe *help/plotTRM.html
e7b5d5db78a8aa509516ebe5e93845fd *help/plotTRMlegend.html
fd12a9241a43351f246ce9cd41858e59 *help/processBiogrid.html
ce26b853587513ffefb6ec1c9a994cc1 *help/rTRM-package.html
ce26b853587513ffefb6ec1c9a994cc1 *help/rTRM.html
89fbaac9e50958af89968b6c7417c171 *help/rTRM.rdb
156efd144bf4fd0776257769b5ae0a66 *help/rTRM.rdx
4b5b58293566b74e1c4299ed9388aee3 *help/removeVertices.html
216bb285bf83f873b94a359c12d2b6a3 *help/writeTRMreport.html
b0b79262cd7251a29fad41a400ae93c6 *html/00Index.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
2b6ac8a55c8b11ecbda16fc21c8aec60 *html/annotateFreq.html
661a3d5bd0bafb342e1fc20991ce943f *html/annotateModule.html
e73824d17c51c71a9726793af944b0d8 *html/annotateTRM.html
846ae066eff753197b4a3cdb1c6db5c1 *html/biogrid_hs.html
b4e1f4917c37fd64a4d82a6e50070515 *html/biogrid_mm.html
57b6c1bd1932d0112981c22ea4377562 *html/findTRM.html
48b622f3472b9198893b4e88f53247d3 *html/getAnnotations.html
3b9d4849b3a35ac2ea062bb8cbb99b24 *html/getBiogridData.html
82469a4b6132d2a7848c3e1dbcc35df3 *html/getConcentricList.html
f4c1bf3828d77f5ca73e13f5f236ce53 *html/getLargestComp.html
ded6ee985a9d0844926ee6bedbc37f7d *html/getMaps.html
7c0f730ca03b3ce78ec24005434e68c5 *html/getMatrices.html
80fd939a5396b8c563482d0305de31bf *html/getMotifsFromEntrezgene.html
52ea9fc5115668992fe79816aff12bee *html/getMotifsFromSymbol.html
95e4432259a1bda79023e0438bb9db84 *html/getOrthologFromMatrix.html
9eaee53f44fa560ebbe76e8ef6b7b3d9 *html/getOrthologs.html
5fbac7f21b13e05d23f49b7562dd4587 *html/getOrthologsFromBiomart.html
fe442e1bf01eaed37318731af0229a09 *html/getSequencesFromGenome.html
8079c12f8100f6f7b6189933fdc8c00b *html/getSimilarityMatrix.html
bf29a99e2446281bb47a0aaed6885cce *html/getTFclass.html
8f50dd88129afd4a769b1c66803b65d4 *html/getTFclassFromEntrezgene.html
b4a43d2d667f21a62a9914a41accb898 *html/getTFterms.html
36235c0020f758fbc0c6936354a04210 *html/initBiomart.html
a8cb9c4a317a735ec53ee382fb03c0d6 *html/layout.arc.html
2bad66c347597a55b425072068f22f24 *html/layout.concentric.html
7efc2528b629031d035bc82fb6b24dee *html/plotDegree.html
63f2c1688c523918290fde75835d60b4 *html/plotGraph.html
165b4aa5bd4985677a0897d2b3945f36 *html/plotTRM.html
911cd0dad4eefd04d824bbde5bd1addb *html/plotTRMlegend.html
1be3e59eca5331122072e2117e75a503 *html/processBiogrid.html
8811f1c6fe3fb9c48d0c3f65664767b4 *html/rTRM-package.html
753e8ee7f6642e441be16be2dcacb475 *html/removeVertices.html
14b875fa953ac407e76c6e21b6598ea5 *html/writeTRMreport.html
f41c2ce67d4c05dd947ee755befef8e9 *unitTests/test_findTRM.R
