insilicoFASTQ {ramwas} | R Documentation

## Construct FASTQ File for In-silico Alignment Experiment

### Description

Creates a FASTQ file with all fragments of `fraglength` bp long.

### Usage

    insilicoFASTQ(con, gensequence, fraglength)

### Arguments

`con` | A `connection` object or a character string naming the output file. If the name ends with ".gz", a compressed file is created. An empty string can be used to output to the console.
`gensequence` | A string or `DNAString` of the DNA sequence.
`fraglength` | Fragment length.

### Details

The function a FASTQ file with all fragments of `fraglength` bp long from the forward strand of the DNA sequence.

### Value

Returns a list with CpG coordinates for each genome sequence.

### Author(s)

Andrey A Shabalin andrey.shabalin@gmail.com

### Examples

    ## There are four 4 bp fragments in a 7 basepair sequence:
    insilicoFASTQ(con="", gensequence = "ABCDEFG", fraglength=4)

[Package ramwas version 1.18.0 Index]