logoContext {riboSeqR} | R Documentation

## Produces a motif of coding start context

### Description

The findCDS function reports the immediate context of coding start. This function uses the 'seqLogo' package to produce a motif of the contexts reported.

### Usage

    logoContext(cds, ...)

### Arguments

`cds` | A GRanges object containing a '$context' value which defines the 7 bases defining coding start context.
`...` | Other values to be passed to the seqLogo function.

### Value

A matrix containing counts of the different bases observed at each position of the 7-base context.

### Author(s)

Thomas J. Hardcastle

[Package riboSeqR version 1.28.0 Index]