readsLenToKeep {ribosomeProfilingQC} | R Documentation

## Get reads length to keep by cutoff percentage

### Description

Set the percentage to filter the reads.

### Usage

    readsLenToKeep(readsLengthDensity, cutoff = 0.8)

### Arguments

`readsLengthDensity` | Output of summaryReadsLength
`cutoff` | Cutoff value.

### Value

Reads length to be kept.

### Examples

    reads <- GRanges("chr1", ranges=IRanges(seq.int(100), width=1),
                     qwidth=sample(25:31, size = 100, replace = TRUE,
                                   prob = c(.01, .01, .05, .1, .77, .05, .01)))
    readsLenToKeep(summaryReadsLength(reads, plot=FALSE))

[Package ribosomeProfilingQC version 1.6.1 Index]