RegionSummaryMethod {rnaEditr} | R Documentation

## Methods to summarize RNA editing levels from multiple sites within a single region.

### Description

Summarize RNA editing sites in a single region by taking maximum, mean, median or first principal component.

### Usage

    MaxSites(rnaEditMatrix, ...)

    MeanSites(rnaEditMatrix, ...)

    MedianSites(rnaEditMatrix, ...)

    PC1Sites(rnaEditMatrix, ...)

### Arguments

`rnaEditMatrix` | A matrix (or data frame) of RNA editing level values on individual sites, with row names as site IDs in the form of "chrAA:XXXXXXXX", and column names as sample IDs. Please make sure to follow the format of example dataset (`data(rnaedit_df)`).
`...` | Dots for additional internal arguments (currently unused).

### Value

A named numeric vector of summarized RNA editing levels with sample IDs as names.

### Examples

      data(rnaedit_df)
      MedianSites(rnaEditMatrix = rnaedit_df)[1:3]

[Package rnaEditr version 1.4.0 Index]