OrderSitesByLocation {rnaEditr} | R Documentation

## Order RNA editing sites by their genomic locations.

### Description

Split RNA editing sites locations into chromosomes and positions, and then order the sites by their genomic locations.

### Usage

    OrderSitesByLocation(sites_char, output = c("dataframe", "vector"))

### Arguments

`sites_char` | A character vector of RNA editing sites. site IDs should be in the form of "chrAA:XXXXXXXX".
`output` | Type of output data. Defaults to `"dataframe"`.

### Value

Depends on the output type. When `output` is set as `"vector"`, a character vector of ordered input RNA editing sites will be returned. When `output` is set as `"dataframe"`, a data frame of ordered RNA editing sites with following columns will be returned:

- `site` : site ID.

- `chr` : chromosome number.

- `pos` : genomic location.

### Examples

      exm_sites <- c(
        "chr22:41327462", "chr22:24969087",
        "chr22:29538891", "chr22:45736763"
      )

      OrderSitesByLocation(
        sites_char = exm_sites,
        output = "dataframe"
      )

[Package rnaEditr version 1.4.0 Index]