SummarizeSingleRegion {rnaEditr} | R Documentation

## Summarizes RNA editing levels from multiple sites in a single region.

### Description

Summarizes RNA editing levels from multiple sites in an input region.

### Usage

    SummarizeSingleRegion(
      region_df,
      rnaEditMatrix,
      selectMethod = MedianSites,
      ...
    )

### Arguments

`region_df` | A data frame with the input genomic region. Please make sure columns `seqnames`, `start`, and `end` are included in the data frame.
`rnaEditMatrix` | A matrix (or data frame) of RNA editing level values for individual sites, with row names as site IDs in the form of "chrAA:XXXXXXXX", and column names as sample IDs. Please make sure to follow the format of example dataset (`data(rnaedit_df)`).
`selectMethod` | Method for summarizing regions. Available options are `"MaxSites", "MeanSites", "MedianSites", "PC1Sites"`. Please see `RegionSummaryMethod` for more details.
`...` | Dots for additional internal arguments (currently unused).

### Value

A named numeric vector of summarized RNA editing levels with sample IDs as column names.

### Examples

      data(rnaedit_df)

      exm_region <- data.frame(
        seqnames = "chr1",
        start =  28691093,
        end = 28826881,
        stringsAsFactors = FALSE
      )

      SummarizeSingleRegion(
        region_df = exm_region,
        rnaEditMatrix = rnaedit_df
      )[1:3]

[Package rnaEditr version 1.4.0 Index]