CreateEditingTable {rnaEditr} | R Documentation

## Convert RNA editing matrix into a special data frame with class `rnaEdit_df`.

### Description

Convert RNA editing matrix to a special data frame with class `rnaEdit_df`, which is then used to identify differentially co-edited regions with function `TestAssociations`.

### Usage

    CreateEditingTable(rnaEditMatrix)

### Arguments

`rnaEditMatrix` | A matrix of RNA editing level values on individual sites, with row names as site IDs in the form of "chrAA:XXXXXXXX", and column names as sample IDs. Please make sure to follow the format of example dataset (`data(rnaedit_df)`).

### Value

A dataset of class `rnaEdit_df`, includes variables `seqnames, start, end, width` and summarized RNA editing levels in each sample.

### See Also

`TransformToGR`, `AllCloseByRegions`, `AllCoeditedRegions`, `SummarizeAllRegions`, `TestAssociations`, `AnnotateResults`

### Examples

      data(rnaedit_df)
      CreateEditingTable(rnaEditMatrix = rnaedit_df)[1:3, 1:5]

[Package rnaEditr version 1.4.0 Index]