treemapPlot {rrvgo} | R Documentation

## treemapPlot Plot GO terms as a treemap.

### Description

treemapPlot Plot GO terms as a treemap.

### Usage

    treemapPlot(reducedTerms, size = "score", title = "", ...)

### Arguments

`reducedTerms` | a data.frame with the reduced terms from reduceSimMatrix()
`size` | what to use as point size. Can be either GO term's "size" or "score"
`title` | title of the plot. Defaults to nothing
`...` | other parameters sent to treemap::treemap()

### Value

A list from the call to the 'treemap()' function is silently returned

### Examples

    ## Not run:
    go_analysis <- read.delim(system.file("extdata/example.txt", package="rrvgo"))
    simMatrix <- calculateSimMatrix(go_analysis$ID, orgdb="org.Hs.eg.db", ont="BP", method="Rel")
    scores <- setNames(-log10(go_analysis$qvalue), go_analysis$ID)
    reducedTerms <- reduceSimMatrix(simMatrix, scores, threshold=0.7, orgdb="org.Hs.eg.db")
    treemapPlot(reducedTerms)

    ## End(Not run)

[Package rrvgo version 1.6.0 Index]