wordcloudPlot {rrvgo} | R Documentation

## wordlcoudPlot Plot GO reduced terms as a wordcloud.

### Description

wordlcoudPlot Plot GO reduced terms as a wordcloud.

### Usage

    wordcloudPlot(reducedTerms, onlyParents = TRUE, ...)

### Arguments

`reducedTerms` | a data.frame with the reduced terms from reduceSimMatrix().
`onlyParents` | use only parent terms to calculate frequencies.
`...` | other parameters sent to wordcloud::wordcloud()

### Value

Nothing

### Examples

    go_analysis <- read.delim(system.file("extdata/example.txt", package="rrvgo"))
    simMatrix <- calculateSimMatrix(go_analysis$ID, orgdb="org.Hs.eg.db", ont="BP", method="Rel")
    scores <- setNames(-log10(go_analysis$qvalue), go_analysis$ID)
    reducedTerms <- reduceSimMatrix(simMatrix, scores, threshold=0.7, orgdb="org.Hs.eg.db")
    wordcloudPlot(reducedTerms, min.freq=1, colors="black")

[Package rrvgo version 1.6.0 Index]