encoderModel_train_encoder {scAlign} | R Documentation

## encoder for scAlign

### Description

Aligns paired data into a joint embedding space.

### Usage

    encoderModel_train_encoder(
      FLAGS,
      CV,
      config,
      num_labels,
      data_shape,
      obj1_name,
      obj2_name,
      source_data,
      source_labels,
      target_data,
      target_labels
    )

### Arguments

`FLAGS` | Tensorflow run arguments.
`CV` | Model that is being run.
`config` | Hardware configuration options.
`num_labels` | Number of unique labels.
`data_shape` | Dimensions of input data.
`source_data` | Source data matrix (cell x feature).
`source_labels` | Source data labels.
`target_data` | Target data matrix (cell x feature).
`target_labels` | Target data labels.

### Value

Final alignment results

[Package scAlign version 1.8.0 Index]