compute_kernel_matrix {scAlign} | R Documentation

## Computes kernel matrix

### Description

Adds the defined kernel to the operation graph for high dimensional pairwise data similarity

### Usage

    compute_kernel_matrix(
      data,
      data_shape,
      labels = NULL,
      method = NULL,
      perplexity = 30,
      diag = "zero"
    )

### Arguments

`data` | cell x feature data matrix
`data_shape` | number of features for data
`labels` | cell x 1 annotation (label) vector
`method` | Kernel to compute pairwise cell similarity
`perplexity` | neighborhood parameter for gaussian kernel
`diag` | indicator for self similarity

### Value

Tensorflow op

[Package scAlign version 1.8.0 Index]