cell_type {scAnnotatR} | R Documentation

## cell_type

### Description

Returns the cell type for the given classifier.

### Usage

    cell_type(classifier)

    ## S4 replacement method for signature 'scAnnotatR'
    cell_type(classifier) <- value

### Arguments

`classifier` | scAnnotatR object. The object is returned from the train_classifier function.
`value` | the new cell type

### Value

cell type of object

scAnnotatR object with the new cell type

### Examples

    data("tirosh_mel80_example")
    selected_marker_genes_B = c("CD19", "MS4A1", "CD79A")
    set.seed(123)
    classifier_b <- train_classifier(train_obj = tirosh_mel80_example,
    assay = 'RNA', slot = 'counts', marker_genes = selected_marker_genes_B,
    cell_type = "B cells", tag_slot = 'active.ident')
    cell_type(classifier_b)

    data("tirosh_mel80_example")
    selected_marker_genes_B = c("CD19", "MS4A1", "CD79A")
    set.seed(123)
    classifier_b <- train_classifier(train_obj = tirosh_mel80_example,
    assay = 'RNA', slot = 'counts', marker_genes = selected_marker_genes_B,
    cell_type = "B cells", tag_slot = 'active.ident')
    cell_type(classifier_b) <- "B cell"

[Package scAnnotatR version 1.0.0 Index]