scHOT_addTestingScaffold {scHOT} | R Documentation

## scHOT_addTestingScaffold

### Description

Add a testing scaffold to a scHOT object

### Usage

    scHOT_addTestingScaffold(scHOT, testingScaffold)

### Arguments

`scHOT` | A scHOT object
`testingScaffold` | A matrix with rows for each testing combination, and columns for level of dimensionality (1 for single gene etc.)

### Value

A scHOT object with slot testingScaffold saved

### Examples

    data(MOB_subset)
    sce_MOB_subset <- MOB_subset$sce_MOB_subset
    scHOT_spatial <- scHOT_buildFromSCE(sce_MOB_subset,
    assayName = "logcounts",
    positionType = "spatial",
    positionColData = c("x", "y"))
    pairs <- matrix(c("Arrb1", "Mtor", "Dnm1l", "Gucy1b3"), ncol = 2, byrow = TRUE)
    scHOT_spatial <- scHOT_addTestingScaffold(scHOT_spatial, pairs)

[Package scHOT version 1.6.0 Index]