# Identify genes associated with multiple expression phenotypes in single-cell CRISPR screening data

## Documentation for package ‘scMAGeCK’ version 1.6.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

scMAGeCK-package | Identify genes associated with multiple expression phenotypes in single-cell CRISPR screening data
featurePlot | Detect the sgRNA distribution and generate Vlnplot to identity gene regulation between different cells.
pre_processRDS | Integrate the imformation of sgRNA into RDS file for the further analysis.
scmageck | Identify genes associated with multiple expression phenotypes in single-cell CRISPR screening data
scmageck_lr | Use linear regression to test the association of gene knockout with all possible genes
scmageck_rra | Use RRA to test the association of gene knockout with certain marker expression
selectPlot | generate the selection plot