Startrac.run {scRepertoire} | R Documentation

## warpper function for Startrac analysis

### Description

warpper function for Startrac analysis

### Usage

    Startrac.run(
      cell.data,
      proj = "CRC",
      cores = NULL,
      n.perm = NULL,
      verbose = FALSE
    )

### Arguments

`cell.data` | data.frame. Each line for a cell, and these columns as required: 'Cell_Name', 'clone.id', 'patient', 'majorCluster', 'loc'
`proj` | character. String used to annotate the project.
`cores` | integer. number of core to be used. default: NULL.
`n.perm` | integer. number of permutation will be performed. If NULL, no permutation. (default: NULL)
`verbose` | logical. wheter return intermediate result (some Startrac objects)

### Details

run the Startrac pipeline

### Value

an list contains data.frame elements "cluster.data","pIndex.migr" and "pIndex.tran"

[Package scRepertoire version 1.4.0 Index]