subsetContig {scRepertoire} | R Documentation

## Subset the product of combineTCR() combineBCR() or expression2List()

### Description

This function allows for the subsetting of the product of combineTCR() combineBCR() or expression2List() by the name of the individual list element. In general the names of are samples + _ + ID, allowing for users to subset the product of combineTCR(), combineBCR(), or expression2List() across a string or individual name.

### Usage

    subsetContig(df, name, variables = NULL)

### Arguments

`df` | The product of combineTCR(), combineBCR(), or expression2List().
`name` | The column header you'd like to use to subset.
`variables` | The values to subset by, must be in the names(df).

### Value

list of contigs that have been filtered for the name parameter

### Examples

    x <- contig_list
    combined <- combineTCR(x, rep(c("PX", "PY", "PZ"), each=2),
    rep(c("P", "T"), 3), cells ="T-AB")
    subset <- subsetContig(combined, name = "sample", variables = c("PX"))

[Package scRepertoire version 1.4.0 Index]