TreeViz {scTreeViz} | R Documentation

## The TreeViz class.

### Description

SummarizedExperiment-like class for datasets that have hierarchies on either rowData or colData. For microbiome data, rowData is a tree hierarchy For single cell data, colData is a tree hierarchy

### Usage

    TreeViz(assays = SimpleList(), rowData = NULL, colData = NULL, ...)

### Arguments

`assays` | simple list of counts
`rowData` | rowData
`colData` | colData
`...` | other parameters for SummarizedExperiment

### Value

a 'TreeViz' object

### Examples

    library(metagenomeSeq)
    data(mouseData)
    counts <- MRcounts(mouseData)
    hierarchy <- fData(mouseData)
    tree <- TreeIndex(hierarchy)
    mbiome <- TreeViz(SimpleList(counts=counts), rowData=tree)

[Package scTreeViz version 1.0.0 Index]