defunct {scater} | R Documentation

## Defunct functions

### Description

Functions that have passed on to the function afterlife. Their successors are also listed.

### Usage

    calculateQCMetrics(...)

    ## S4 method for signature 'SingleCellExperiment'
    normalize(object, ...)

    centreSizeFactors(...)

### Arguments

`object, ...` | Ignored arguments.

### Details

`calculateQCMetrics` is succeeded by `perCellQCMetrics` and `perFeatureQCMetrics`.

`normalize` is succeeded by `logNormCounts`.

`centreSizeFactors` has no replacement - the SingleCellExperiment is removing support for multiple size factors, so this function is now trivial.

### Value

All functions error out with a defunct message pointing towards its descendent (if available).

### Author(s)

Aaron Lun

### Examples

    try(calculateQCMetrics())

[Package scater version 1.22.0 Index]