pdacData {scatterHatch} | R Documentation

## Tissue-CyCIF data of Pancreatic Ductal Adenocarcinoma (PDAC)

### Description

Single-cell resolution of 4 cellular compartments in a human Pancreatic Dual Adenocarcinoma sample that spans across three distinct tissues: the pancreas, small intestine, and tumor. Contains cartesian coordinates of each cell along with the frame it was identified from in t-CyCIF imaging.

### Usage

    data(pdacData)

### Format

A data frame with 158159 rows and 3 variables:

frame

  10x frame from t-CyCIF imaging. Used to identify tissue type of cell.

Xt

  Cartesian x-coordinate of cell across entire tissue sample (across all frames).

Yt

  Cartesian y-coordinate of cell across entire tissue sample (across all frames)

### Source

Shortened version of t-CyCIF single-cell data of Pancreatic Ductal Adenocarcinoma (PDAC) resection specimen from Lin et. al with only the cartesian coordinates and frames each cell is in present.

Entire dataset can be downloaded from http://lincs.hms.harvard.edu/wordpress/wp-content/uploads/2017/05/rawdata_Figure78_PDAC.zip

### References

Lin et al. (2018) eLife 2018;7:e31657 (eLife)

[Package scatterHatch version 1.0.0 Index]