get_scores {scone} | R Documentation

## Extract scone scores

### Description

Extract scone scores

### Usage

    get_scores(x)

    get_score_ranks(x)

    ## S4 method for signature 'SconeExperiment'
    get_scores(x)

    ## S4 method for signature 'SconeExperiment'
    get_score_ranks(x)

### Arguments

`x` | an object of class `SconeExperiment`.

### Value

`get_scores` returns a matrix with all (non-missing) scone scores, ordered by average score rank.

`get_score_ranks` returns a vector of average score ranks.

### Examples

    set.seed(42)
    mat <- matrix(rpois(500, lambda = 5), ncol=10)
    colnames(mat) <- paste("X", 1:ncol(mat), sep="")
    obj <- SconeExperiment(mat)
    res <- scone(obj, scaling=list(none=identity, uq=UQ_FN),
               evaluate=TRUE, k_ruv=0, k_qc=0,
               eval_kclust=2, bpparam = BiocParallel::SerialParam())
    scores = get_scores(res)
    score_ranks = get_score_ranks(res)

[Package scone version 1.18.0 Index]