scp1 {scp} | R Documentation

## Single Cell QFeatures data

### Description

A small QFeatures object with SCoPE2 data. The object is composed of 5 assays, including 3 PSM-level assays, 1 peptide assay and 1 protein assay.

### Usage

    data("scp1")

### Format

An object of class `QFeatures` of length 5.

### Details

The dataset is a subset of the SCoPE2 dataset (version 2, Specht et al. 2019, BioRXiv). This dataset was converted to a `QFeatures` object where each assay in stored as a `SingleCellExperiment` object. One assay per chromatographic batch ("LCA9", "LCA10", "LCB3") was randomly sampled. For each assay, 100 proteins were randomly sampled. PSMs were then aggregated to peptides and joined in a single assay. Then peptides were aggregated to proteins.

### Examples

    data("scp1")
    scp1

[Package scp version 1.4.0 Index]