cbtop10000 {scruff} | R Documentation

## Top 10,000 rows for v1, v2, and v3 cell barcode whitelist files

### Description

The first 10,000 cell barcodes in v1 (737K-april-2014_rc.txt), v2 (737K-august-2016.txt), and v3 (3M-february-2018.txt) cell barcode whitelist files. This object is used for testing the validity of input assay chemistry `validCb` for tenxBamqc function. The cell barcodes for the first 10,000 alignments in the input BAM file will be mapped to each chemistry's whitelist to determine the assay chemistry of the BAM file.

### Usage

    cbtop10000

### Format

A `data.table` object.

[Package scruff version 1.12.1 Index]