count_reads_ranges {segmenter} | R Documentation

## Count reads in `GRanges` objects from bam files

### Description

Count reads in `GRanges` objects from bam files

### Usage

    count_reads_ranges(ranges, cellmarkfiletable, inputbamdir)

### Arguments

`ranges` | A `GRanges` to count in.
`cellmarkfiletable` | A string. The path to the input files table.
`inputbamdir` | A `string`. The path to the input bam files directory.

### Value

A `SummarizedExperiment` object with `ranges` as its `rowRanges` and the counts as the `assay`.

[Package segmenter version 1.0.0 Index]