binarize_bed {segmenter} | R Documentation

## Binarize the bed files

### Description

Transform the aligned reads into a binary format.

### Usage

    binarize_bed(
      inputdir,
      cellmarkfiletable,
      chromsizefile,
      binsize = 200,
      outputdir
    )

### Arguments

`inputdir` | A string. The dirctory of the bam files.
`cellmarkfiletable` | A string. The path to the input files table. Only
`chromsizefile` | A string. The path to the chromosomes sizes file.
`binsize` | An integer. The number in bp used to generate binarized files.
`outputdir` | A string. The path to a directory where output will be written.

### Value

NULL. Write files to the outputdir

### See Also

Binarize binarize_bam

[Package segmenter version 1.0.0 Index]