easyLoad_bed {seqsetvis} | R Documentation

## easyLoad_bed takes a character vector of file paths to bed plus files and returning named list of GRanges.

### Description

Mainly a utility function for loading MACS2 narrowPeak and broadPeak.

### Usage

    easyLoad_bed(
      file_paths,
      file_names = NULL,
      extraCols = character(),
      n_cores = getOption("mc.cores", 1)
    )

### Arguments

`file_paths` | character vector of paths to narrowPeak files. If named, those names will be used in output unless overriden by providing file_names.
`file_names` | character vector of names for output list. If not NULL will override any existing names for file_paths. Default is NULL.
`extraCols` | named character vector of classes. passed to rtracklayer::import for format = "BED". default is character().
`n_cores` | number of cores to use, uses mc.cores option if set or 1.

### Value

a named list of GRanges loaded from file_paths

### Examples

    bed_f = system.file("extdata/test_loading.bed",
        package = "seqsetvis", mustWork = TRUE)
    easyLoad_bed(bed_f, "my_bed")

[Package seqsetvis version 1.14.4 Index]