qualityRank {sesame} | R Documentation

## This function looks at public data of similar nature e.g., tissue, FFPE vs non-FFPE, etc to evaluate the quality of the target data quality

### Description

This function looks at public data of similar nature e.g., tissue, FFPE vs non-FFPE, etc to evaluate the quality of the target data quality

This function looks at public data of similar nature e.g., tissue, FFPE vs non-FFPE, etc to evaluate the quality of the target data quality

### Usage

    qualityRank(sdf, tissue = NULL, samplePrep = NULL, raw = FALSE)

    qualityRank(sdf, tissue = NULL, samplePrep = NULL, raw = FALSE)

### Arguments

`sdf` | a raw (unprocessed) `SigDF`
`tissue` | A string (blood,buccal and saliva)
`samplePrep` | FFPE, fresh, frozen
`raw` | to return the raw comparison table

### Value

three numbers: 1. The number of public samples compared. 2. The fraction of public samples with more nondetection, and 3. The fraction of public samples with lower mean intensity 4. The higher the fraction, the better the sample.

three numbers: 1. The number of public samples compared. 2. The fraction of public samples with more nondetection, and 3. The fraction of public samples with lower mean intensity 4. The higher the fraction, the better the sample.

### Examples

    sesameDataCache("EPIC") # if not done yet
    sdf <- sesameDataGet('EPIC.1.SigDF')
    ranks <- qualityRank(sdf)

    sesameDataCache("EPIC") # if not done yet
    sdf <- sesameDataGet('EPIC.1.SigDF')
    ranks <- qualityRank(sdf)

[Package sesame version 1.12.9 Index]