probeSuccessRate {sesame} | R Documentation

## Whole-dataset-wide Probe Success Rate

### Description

This function calculates the probe success rate using pOOBAH detection p-values. Probes that has a detection p-value higher than a specific threshold are considered failed probes.

### Usage

    probeSuccessRate(sdf, mask = TRUE, max_pval = 0.05)

### Arguments

`sdf` | a `SigDF`
`mask` | whether or not we count the masked probes in SigDF
`max_pval` | the maximum p-value to consider detection success

### Value

a fraction number as probe success rate

### Examples

    sesameDataCache("EPIC") # if not done yet
    sdf = sesameDataGet('EPIC.1.SigDF')
    probeSuccessRate(sdf)

[Package sesame version 1.12.9 Index]