inferInfiniumIChannel {sesame} | R Documentation

## Infer and reset color channel for Type-I probes instead of using what is specified in manifest. The results are stored to sdf@extra$IGG and sdf@extra$IRR slot.

### Description

IGG => Type-I green that is inferred to be green IRR => Type-I red that is inferred to be red

### Usage

    inferInfiniumIChannel(
      sdf,
      switch_failed = FALSE,
      verbose = FALSE,
      summary = FALSE
    )

### Arguments

`sdf` | a `SigDF`
`switch_failed` | whether to switch failed probes (default to FALSE)
`verbose` | whether to print correction summary
`summary` | return summarized numbers only.

### Value

a `SigDF`, or numerics if summary == TRUE

### Examples

    sdf <- sesameDataGet('EPIC.1.SigDF')
    inferInfiniumIChannel(sdf)

[Package sesame version 1.12.9 Index]