reIdentify {sesame} | R Documentation

## Re-identify IDATs by restoring scrambled SNP intensities

### Description

This requries setting a seed with a secret number that was used to de-identify the IDAT (see example). This requires a secret number that was used to de-idenitfy the IDAT

### Usage

    reIdentify(path, out_path = NULL, snps = NULL, mft = NULL)

### Arguments

`path` | input IDAT file
`out_path` | output IDAT file
`snps` | SNP definition, if not given, default to SNP probes
`mft` | sesame-compatible manifest if non-standard

### Value

NULL, changes made to the IDAT files

### Examples

    temp_out <- tempfile("test")

    set.seed(123)
    reIdentify(system.file(
        "extdata", "4207113116_A_Grn.idat", package = "sesameData"), temp_out)
    unlink(temp_out)

[Package sesame version 1.12.9 Index]