compareDatbaseSetOverlap {sesame} | R Documentation

## compareDatbaseSetOverlap calculates the pariwise overlap between given list of database sets using a distance metric.

### Description

compareDatbaseSetOverlap calculates the pariwise overlap between given list of database sets using a distance metric.

### Usage

    compareDatbaseSetOverlap(
      databaseSets = NA,
      metric = "Jaccard",
      verbose = FALSE
    )

### Arguments

`databaseSets` | List of vectors corresponding to the database sets of interest with associated meta data as an attribute to each element. Optional. (Default: NA)
`metric` | String representing the similarity metric to use. Optional. (Default: "Jaccard").
`verbose` | Logical value indicating whether to display intermediate text output about the type of test. Optional. (Default: FALSE)

### Value

An upper triangular matrix containing a metric (Jaccard) comparing the pairwise distances between database sets.

### Examples

    databaseSetNames = c('KYCG.MM285.seqContextN.20210630')
    databaseSets = do.call(c, lapply(databaseSetNames, sesameDataGet))
    compareDatbaseSetOverlap(databaseSets)

[Package sesame version 1.12.9 Index]