shinySummarize-methods {shinyMethyl} | R Documentation

## Summarizing a large 450K experiment into a shinyMethylSet

### Description

Summarizing methylation data from a RGChannelSet or GenomicRatioSet into a shinyMethylSet needed to launch the interactive interface of shinyMethyl. That works for both the 450k and EPIC arrays.

### Usage

    ## S4 method for signature 'RGChannelSet'
    shinySummarize(object)
    ## S4 method for signature 'GenomicRatioSet'
    shinySummarize(object)

### Arguments

`object` | Either a `RGChannelSet` or a `GenomicRatioSet`.

### Details

Either a `RGChannelSet` is transformed into a `shinyMethylSet`, or a `GenomicRatioSet` is transformed to a `shinyMethylSet`

### Author(s)

Jean-Philippe Fortin jfortin@jhsph.edu

### See Also

`shinyMethylSet` for the output object and `RGChannelSet` or `GenomicRatioSet` for the input object.

### Examples

    if (require(minfiData)){
      library(minfiData)
      summarized.data <- shinySummarize(RGsetEx)
    }

[Package shinyMethyl version 1.30.0 Index]