getTreats {signatureSearch} | R Documentation

## Get Treatment Information

### Description

Get treatment information including perturbation name, cell type and perturbation type from the reference database

### Usage

    getTreats(refdb, sep = TRUE)

### Arguments

`refdb` | character(1), one of "lincs", "lincs_expr", "cmap" or "cmap_expr" when using the pre-generated CMAP/LINCS databases or path to the HDF5 file generated with the `build_custom_db` function. The details is shown in the 'refdb' argument of the `qSig` function
`sep` | TRUE or FALSE, whether to separate the treatments or column names of the reference database into 'pert', 'cell' and 'pert_type'.

### Value

character vector if `sep` argument is set as FALSE. Tibble object with 'pert', 'cell', 'pert_type' columns if `sep` is TRUE

### Examples

    refdb <- system.file("extdata", "sample_db.h5", package="signatureSearch")
    treat_info <- getTreats(refdb, sep=TRUE)

[Package signatureSearch version 1.8.2 Index]