cellNtestPlot {signatureSearch} | R Documentation

## Number of Tests in Cell Types

### Description

Bar plot of number of perturbations/compounds tested in cell types where cell types are grouped by 'primary site'.

### Usage

    cellNtestPlot(refdb)

### Arguments

`refdb` | character(1), one of "lincs", "lincs_expr", "cmap" or "cmap_expr" when using the pre-generated CMAP/LINCS databases or path to the HDF5 file generated with the `build_custom_db` function. The details is shown in the 'refdb' argument of the `qSig` function

### Value

Faceted bar plot

### Examples

    refdb <- system.file("extdata", "sample_db.h5", package="signatureSearch")
    cellNtestPlot(refdb)

[Package signatureSearch version 1.8.2 Index]