SparrowResult-class {sparrow} | R Documentation

## A SparrowResult object holds the results from a sparrow::seas() call.

### Description

A call to `seas()` will produce analyses for an arbitrary number of GSEA methods, the results of which will be stored and accessible here using the `result()`, `results()`, and `resultNames()`.

In addition, the `GeneSetDb()` used for the analysis is accessible via geneSetDb(), and the results from the differential expression analysis is available via `logFC()`.

Visualizing results of a geneset based analysis also are functions that operate over a `SparrowResult` object, for instance see the `iplot()` and the `sparrow.shiny` package.

### Slots

`gsd`

  The `GeneSetDb()` this analysis was run over

`results`

  The list of individual results generated by each of the GSEA methods that were run.

`logFC`

  The differential expression statistics for each individual feature measured in the experiment.

[Package sparrow version 1.0.3 Index]