renameCollections {sparrow} | R Documentation

## Rename the collections in a GeneSetDb

### Description

This function remaps names of collections in the database from their current names to ones specified by the user.

### Usage

    renameCollections(x, rename = NULL, ...)

### Arguments

`x` | A GeneSetDb object
`rename` | a named character vector. `names(rename)` are the names of the collection you want to rename, and their values are the new names.
`...` | pass it along

### Value

GeneSetDb `x` with renamed `geneSets(x)$collection` values.

### Examples

    gdb <- exampleGeneSetDb()
    ngdb <- renameCollections(gdb, c("c2" = "MSigDB C2", "c7" = "ImmuneSigDb"))
    all.equal(
      unname(geneSetURL(gdb, "c7", "GSE3982_BCELL_VS_TH2_DN")),
      unname(geneSetURL(ngdb, "ImmuneSigDb", "GSE3982_BCELL_VS_TH2_DN")))

[Package sparrow version 1.0.3 Index]