stabilize {spatialDE} | R Documentation

## Stabilize variance of counts

### Description

Stabilize variance of negative binomial data using Anscombe's approximation. This function is a wrapper for `stabilize` from the NaiveDE Python package.

### Usage

    stabilize(counts)

### Arguments

`counts` | `matrix` with expression values for samples in columns and genes in rows.

### Value

`matrix` of variance stabilized counts.

### Examples

    set.seed(42)
    mock <- mockSVG(10, 1000, 10)
    stabilized <- stabilize(mock$counts)

[Package spatialDE version 1.0.0 Index]