compare_motif_pairs {spatzie} | R Documentation

## Compare pairs of motifs between two interaction datasets

### Description

Compute the log-likelihood ratio that a motif pair is differential between two interaction datasets. Note that motif pair significance should have been computed using the same method for both datasets.

### Usage

    compare_motif_pairs(
      interaction_data1,
      interaction_data2,
      differential_p = 0.05
    )

### Arguments

`interaction_data1` | an interactionData object of paired genomic regions that has been scanned for significant motif:motif interactions
`interaction_data2` | an interactionData object of paired genomic regions that has been scanned for significant motif:motif interactions
`differential_p` | threshold for significance of differential p-value

### Value

a matrix of the log likelihood ratio of motif pairs that are significantly differential between two interactionData sets

### Author(s)

Jennifer Hammelman

### Examples

    pheatmap::pheatmap(compare_motif_pairs(spatzie::int_data_k562,
                                           spatzie::int_data_mslcl, 5e-06),
                       fontsize = 6)

[Package spatzie version 1.0.1 Index]