# Identification of enriched motif pairs from chromatin interaction data

## Documentation for package ‘spatzie’ version 1.0.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

anchor_pair_enrich | Determine enriched motifs in anchors
anchor_pair_example_count | spatzie count correlation data set
anchor_pair_example_match | spatzie match association data set
anchor_pair_example_score | spatzie score correlation data set
compare_motif_pairs | Compare pairs of motifs between two interaction datasets
compare_pairs_example | compare_motif_pairs example
filter_motifs | Filter motifs based on occurrence within interaction data
filter_pairs_example | spatzie score correlation filtered data set
filter_pair_motifs | Filter significant motif interactions
find_ep_coenrichment | Find co-enriched motif pairs in enhancer-promoter interactions
get_specific_interactions | Get interactions that contain a specific motif pair
interactions_yy1 | Mouse YY1 Enhancer - Promoter Interactions Data Set
interactions_yy1_enhancer | Mouse YY1 Enhancer - Promoter Interactions Data Set - YY1 enhancers
interactions_yy1_ep | Mouse YY1 Enhancer - Promoter Interactions Data Set - YY1 enhancers/promoters
interactions_yy1_promoter | Mouse YY1 Enhancer - Promoter Interactions Data Set - YY1 promoters
int_data_k562 | K562 Enhancer - Promoter Interactions Data Set
int_data_mslcl | MSLCL Enhancer - Promoter Interactions Data Set
int_data_yy1 | Mouse YY1 Enhancer - Promoter Interactions Data Set
plot_motif_occurrence | Plot motif occurrence
scan_interactions_example | Interactions scanned for motifs - interactionData object
scan_interactions_example_filtered | Interactions with motifs filtered for significance - interactionData object
scan_motifs | Scans interaction file for motif instances
spatzie | spatzie