iRTpeptides {specL} | R Documentation

## iRT peptides - independent retention time peptides

### Description

`iRTpeptides` data are used for `genSwathIonLib` rt normalization assuming.

`iRTpeptides` first appear in the `protViz` 0.1.45 package. It has been removed in `protViz` 0.2.10 to avoid package dependencies.

### Format

contains a table

### Author(s)

Jonas Grossmann and Christian Panse 2013

### References

Using iRT, a normalized retention time for more targeted measurement of peptides. Escher C, Reiter L, MacLean B, Ossola R, Herzog F, Chilton J, MacCoss MJ, Rinner O. Source Proteomics. 2012 Apr;12(8):1111-21. doi: 10.1002/pmic.201100463.

### Examples

        plot(sort(iRTpeptides$rt))

        plot(pim<-protViz::parentIonMass(as.character(iRTpeptides$peptide)) ~ iRTpeptides$rt)

[Package specL version 1.28.0 Index]